IL_10QM_036
3D structure
- PDB id
- 10QM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.coli 50S ribosomal subunit bound to compound 48a
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.49 Å
Loop
- Sequence
- GGGAAAC*GGAAGAUGUAACGGGGC
- Length
- 24 nucleotides
- Bulged bases
- 10QM|1|I|A|1127, 10QM|1|I|U|1130
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_10QM_036 not in the Motif Atlas
- Geometric match to IL_8B0X_101
- Geometric discrepancy: 0.0572
- The information below is about IL_8B0X_101
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_50715.4
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L
- Number of instances in this motif group
- 4
Unit IDs
10QM|1|I|G|1024
10QM|1|I|G|1025
10QM|1|I|G|1026
10QM|1|I|A|1027
10QM|1|I|A|1028
10QM|1|I|A|1029
10QM|1|I|C|1030
*
10QM|1|I|G|1124
10QM|1|I|G|1125
10QM|1|I|A|1126
10QM|1|I|A|1127
10QM|1|I|G|1128
10QM|1|I|A|1129
10QM|1|I|U|1130
10QM|1|I|G|1131
10QM|1|I|U|1132
10QM|1|I|A|1133
10QM|1|I|A|1134
10QM|1|I|C|1135
10QM|1|I|G|1136
10QM|1|I|G|1137
10QM|1|I|G|1138
10QM|1|I|G|1139
10QM|1|I|C|1140
Current chains
- Chain I
- 23S ribosomal RNA
Nearby chains
- Chain J
- 5S ribosomal RNA; 5S rRNA
- Chain L
- 50S ribosomal protein L3
- Chain R
- Large ribosomal subunit protein uL13
- Chain U
- 50S ribosomal protein L16
- Chain m
- 50S ribosomal protein L36
Coloring options: