IL_10QM_040

3D structure

PDB id

10QM (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli 50S ribosomal subunit bound to compound 48a

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

GAAAG*CUC

Length

8 nucleotides

Bulged bases

10QM|1|I|A|1088

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_10QM_040 not in the Motif Atlas

Geometric match to IL_1MMS_004

Geometric discrepancy: 0.3923

The information below is about IL_1MMS_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_36931.4

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

25

Unit IDs

10QM|1|I|G|1087
10QM|1|I|A|1088
10QM|1|I|A|1089
10QM|1|I|A|1090
10QM|1|I|G|1091
*
10QM|1|I|C|1100
10QM|1|I|U|1101
10QM|1|I|C|1102

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain O

Large ribosomal subunit protein uL6

Chain Q

Large ribosomal subunit protein uL11

Chain m

50S ribosomal protein L36