Motif IL_36931.5 Version IL_36931.5 of this group appears in releases 4.14 to 4.14
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 1-7 | 2-3 | 2-6 | 3-6 | 4-5 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_9SUM_210 | 9SUM | 0.6063 | 1 | CA | SSU rRNA | C | 1345 | G | 1346 | C | 1347 | G | 1349 | * | C | 1321 | U | 1322 | G | 1323 | cWW | cWW | ||||
| 2 | IL_5D8H_003 | 5D8H | 0.2859 | 1 | Major groove platform with extra cWW | A | LSU rRNA | G | 1197 | G | 1199 | U | 1200 | G | 1201 | * | C | 1210 | U | 1211 | C | 1212 | cWW | cSH | cWw | cWW | |
| 3 | IL_1MMS_004 | 1MMS | 0.2998 | 1 | D | LSU rRNA | G | 1087 | G | 1089 | U | 1090 | G | 1091 | * | C | 1100 | U | 1101 | C | 1102 | cWW | cSH | cWw | cWW | ||
| 4 | IL_9PN5_154 | 9PN5 | 0.1265 | 1 | B5 | SSU rRNA | U | 259 | U | 261 | U | 262 | C | 263 | * | G | 204 | U | 205 | A | 206 | cWW | cSH | cWw | cWW | ||
| 5 | IL_9SUM_150 | 9SUM | 0.1151 | 1 | CA | SSU rRNA | U | 248 | G | 250 | U | 251 | C | 252 | * | G | 201 | U | 202 | A | 203 | cWW | cSH | cWw | cWW | ||
| 6 | IL_8CRE_403 | 8CRE | 0.1543 | 1 | Major groove platform with extra cWW (H) | CM | SSU rRNA | U | 257 | U | 259 | U | 260 | C | 261 | * | G | 202 | U | 203 | A | 204 | cWW | cSH | cWw | cWW | |
| 7 | IL_7A0S_019 | 7A0S | 0.0914 | 0 | Major groove platform with extra cWW | X | LSU rRNA | G | 751 | G | 752 | U | 753 | G | 754 | * | C | 769 | U | 770 | C | 771 | cWW | cSH | cWw | cWW | |
| 8 | IL_9DFE_020 | 9DFE | 0.0000 | 0 | Major groove platform with extra cWW (H) | 1A | LSU rRNA | G | 738 | G | 739 | U | 740 | G | 741 | * | C | 756 | U | 757 | C | 758 | cWW | cSH | ntSH | cWw | cWW |
| 9 | IL_9AXU_030 | 9AXU | 0.1147 | 0 | 2 | LSU rRNA | G | 901 | A | 902 | U | 903 | U | 904 | * | A | 920 | U | 921 | C | 922 | cWW | cSH | ntSH | cWw | cWW | |
| 10 | IL_9H3G_037 | 9H3G | 0.1398 | 0 | A | LSU rRNA | G | 878 | A | 879 | U | 880 | A | 881 | * | U | 897 | U | 898 | C | 899 | cWW | cSH | ntSH | cWw | cWW | |
| 11 | IL_4V9F_028 | 4V9F | 0.1395 | 0 | Major groove platform with extra cWW | 0 | LSU rRNA | G | 830 | U | 831 | U | 832 | G | 833 | * | C | 849 | U | 850 | C | 851 | cWW | cSH | cWw | cWW | |
| 12 | IL_9SUM_030 | 9SUM | 0.1295 | 0 | A | LSU rRNA | G | 812 | G | 813 | U | 814 | U | 815 | * | A | 831 | U | 832 | C | 833 | cWW | cSH | cWw | cWW | ||
| 13 | IL_8GLP_060 | 8GLP | 0.1070 | 0 | Major groove platform with extra cWW (H) | L5 | LSU rRNA | G | 1586 | G | 1587 | U | 1588 | C | 1589 | * | G | 1605 | U | 1606 | C | 1607 | cWW | cSH | cWw | cWW | |
| 14 | IL_8OI5_034 | 8OI5 | 0.1088 | 0 | Major groove platform with extra cWW (H) | 1 | LSU rRNA | G | 865 | G | 866 | U | 867 | U | 868 | * | A | 884 | U | 885 | C | 886 | cWW | cSH | cWw | cWW | |
| 15 | IL_9PN5_031 | 9PN5 | 0.1079 | 0 | A1 | LSU rRNA | G | 869 | G | 870 | U | 871 | U | 872 | * | A | 888 | U | 889 | C | 890 | cWW | cSH | cWw | cWW | ||
| 16 | IL_9DFE_094 | 9DFE | 0.3761 | 1 | Major groove minor groove platform with extra cWW (H) | 1A | LSU rRNA | G | 2489 | G | 2490 | U | 2492 | U | 2493 | * | A | 2459 | U | 2460 | C | 2461 | cWW | cSH | cWw | cWW | |
| 17 | IL_4WF9_092 | 4WF9 | 0.3883 | 1 | Major groove minor groove platform with extra cWW | X | LSU rRNA | G | 2516 | G | 2517 | U | 2519 | U | 2520 | * | A | 2486 | U | 2487 | C | 2488 | cWW | cSH | cWw | cWW | |
| 18 | IL_7A0S_086 | 7A0S | 0.3968 | 1 | Major groove minor groove platform with extra cWW | X | LSU rRNA | G | 2468 | G | 2469 | U | 2471 | U | 2472 | * | A | 2438 | U | 2439 | C | 2440 | cWW | cSH | ncWB | cWw | cWW |
| 19 | IL_8B0X_152 | 8B0X | 0.3844 | 1 | a | LSU rRNA | U | 2493 | G | 2494 | U | 2496 | U | 2497 | * | A | 2463 | U | 2464 | A | 2465 | cWW | cSH | cWw | cWW | ||
| 20 | IL_4V9F_084 | 4V9F | 0.3539 | 1 | Major groove minor groove platform with extra cWW | 0 | LSU rRNA | G | 2524 | G | 2525 | U | 2527 | U | 2528 | * | G | 2494 | U | 2495 | C | 2496 | cWW | cSH | cWw | cWW | |
| 21 | IL_9E6Q_086 | 9E6Q | 0.3570 | 1 | Major groove minor groove platform with extra cWW (H) | 1 | LSU rRNA | G | 2603 | G | 2604 | U | 2606 | PSU | 2607 | * | G | 2573 | OMU | 2574 | C | 2575 | cWW | cSH | cWw | cWW | |
| 22 | IL_8OI5_105 | 8OI5 | 0.3247 | 1 | Major groove minor groove platform with extra cWW (H) | 1 | LSU rRNA | U | 2830 | U | 2831 | U | 2833 | U | 2834 | * | G | 2800 | U | 2801 | G | 2802 | cWW | cWw | cWW | ||
| 23 | IL_8GLP_143 | 8GLP | 0.3256 | 1 | Major groove minor groove platform with extra cWW (H) | L5 | LSU rRNA | U | 4435 | U | 4436 | U | 4438 | U | 4439 | * | G | 4405 | U | 4406 | G | 4407 | cWW | cWw | cWW | ||
| 24 | IL_9SUM_098 | 9SUM | 0.3344 | 1 | A | LSU rRNA | U | 2758 | U | 2759 | U | 2761 | U | 2762 | * | G | 2728 | U | 2729 | G | 2730 | cWW | cWw | cWW | |||
| 25 | IL_9PN5_100 | 9PN5 | 0.3390 | 1 | A1 | LSU rRNA | U | 2858 | U | 2859 | U | 2861 | U | 2862 | * | G | 2828 | U | 2829 | G | 2830 | cWW | cWw | cWW | |||
| 26 | IL_9H3G_119 | 9H3G | 0.3329 | 1 | A | LSU rRNA | U | 2857 | U | 2858 | U | 2860 | U | 2861 | * | G | 2827 | U | 2828 | G | 2829 | cWW | cWw | cWW | |||
| 27 | IL_4V9F_003 | 4V9F | 0.5113 | 0 | Major groove platform with extra cWW | 0 | LSU rRNA | C | 440 | A | 441 | A | 442 | C | 443 | * | G | 39 | C | 40 | G | 41 | cWW | cSH | cWWa | ncWW | cWW |
| 28 | IL_3PDR_004 | 3PDR | 0.5416 | 0 | Major groove platform with extra cWW | X | M-box riboswitch (ykoK leader) | C | 33 | U | 34 | C | 35 | C | 36 | * | G | 149 | U | 150 | G | 151 | cWW | cSH | cwW | cWW | |
| 29 | IL_9E9Q_003 | 9E9Q | 0.6901 | 0 | A | Sarbecovirus 5'UTR | G | 38 | U | 39 | U | 40 | G | 41 | * | C | 23 | U | 24 | U | 25 | ncWWa | ncSH | cwW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UUUUU*GUG | 5 |
| GGUU*AUC | 3 |
| GGUUU*AUC | 3 |
| GAGUG*CUC | 2 |
| UUUUC*GUA | 2 |
| GGUG*CUC | 2 |
| CGCUG*CUG | 1 |
| UUGUC*GUA | 1 |
| GAUU*AUC | 1 |
| GAUA*UUC | 1 |
| GUUG*CUC | 1 |
| GGUC*GUC | 1 |
| UGUUU*AUA | 1 |
| GGCUU*GUC | 1 |
| GGUU(PSU)*G(OMU)C | 1 |
| CAAC*GCG | 1 |
| CUCC*GUG | 1 |
| GUUG*CUU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UUU*U | 7 |
| GU*U | 6 |
| GUU*U | 4 |
| GCU*U | 2 |
| AGU*U | 2 |
| AU*U | 2 |
| UU*U | 2 |
| UGU*U | 1 |
| GUU*(OMU) | 1 |
| AA*C | 1 |
| UC*U | 1 |
Release history
| Release | 4.14 |
|---|---|
| Date | 2026-09-09 |
| Status | Updated, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (13)
- Major groove platform with extra cWW (5)
- Major groove platform with extra cWW (H) (4)
- Major groove minor groove platform with extra cWW (H) (4)
- Major groove minor groove platform with extra cWW (3)
- Basepair signature
- cWW-cSH-cWW-cWW
- Heat map statistics
- Min 0.04 | Avg 0.36 | Max 0.83
Coloring options: