IL_10QM_043

3D structure

PDB id

10QM (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli 50S ribosomal subunit bound to compound 48a

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

CUGCGAAG*UGGAG

Length

13 nucleotides

Bulged bases

10QM|1|I|C|1211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_10QM_043 not in the Motif Atlas

Homologous match to IL_7A0S_043

Geometric discrepancy: 0.1714

The information below is about IL_7A0S_043

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_90775.3

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

30

Unit IDs

10QM|1|I|C|1208
10QM|1|I|U|1209
10QM|1|I|G|1210
10QM|1|I|C|1211
10QM|1|I|G|1212
10QM|1|I|A|1213
10QM|1|I|A|1214
10QM|1|I|G|1215
*
10QM|1|I|U|1234
10QM|1|I|G|1235
10QM|1|I|G|1236
10QM|1|I|A|1237
10QM|1|I|G|1238

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain Y

50S ribosomal protein L20