IL_10QM_048

3D structure

PDB id

10QM (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli 50S ribosomal subunit bound to compound 48a

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

CGAGG*CGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_10QM_048 not in the Motif Atlas

Homologous match to IL_7A0S_049

Geometric discrepancy: 0.2475

The information below is about IL_7A0S_049

Detailed Annotation

tSH-tWH-tHS

Broad Annotation

No text annotation

Motif group

IL_05821.3

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

19

Unit IDs

10QM|1|I|C|1357
10QM|1|I|G|1358
10QM|1|I|A|1359
10QM|1|I|G|1360
10QM|1|I|G|1361
*
10QM|1|I|C|1370
10QM|1|I|G|1371
10QM|1|I|U|1372
10QM|1|I|A|1373
10QM|1|I|G|1374

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain K

50S ribosomal protein L2

Chain f

50S ribosomal protein L28

Chain k

50S ribosomal protein L34