IL_10QM_065

3D structure

PDB id

10QM (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli 50S ribosomal subunit bound to compound 48a

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

UAUGUAG*UGAAA

Length

12 nucleotides

Bulged bases

10QM|1|I|U|1714

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_10QM_065 not in the Motif Atlas

Geometric match to IL_8B0X_128

Geometric discrepancy: 0.0696

The information below is about IL_8B0X_128

Detailed Annotation

6x5 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_82100.1

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

10QM|1|I|U|1712
10QM|1|I|A|1713
10QM|1|I|U|1714
10QM|1|I|G|1715
10QM|1|I|U|1716
10QM|1|I|A|1717
10QM|1|I|G|1718
*
10QM|1|I|U|1742
10QM|1|I|G|1743
10QM|1|I|A|1744
10QM|1|I|A|1745
10QM|1|I|A|1746

Current chains

Chain I

23S ribosomal RNA

Nearby chains