IL_8B0X_128

3D structure

PDB id

8B0X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translating 70S ribosome in the unrotated state (P and E, tRNAs)

Experimental method

ELECTRON MICROSCOPY

Resolution

1.55 Å

Loop

Sequence

UAUGUAG*UGAAA

Length

12 nucleotides

Bulged bases

8B0X|1|a|U|1716

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8B0X_128 not in the Motif Atlas

Homologous match to IL_5J7L_309

Geometric discrepancy: 0.097

The information below is about IL_5J7L_309

Detailed Annotation

6x5 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_88269.4

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

8B0X|1|a|U|1714
8B0X|1|a|A|1715
8B0X|1|a|U|1716
8B0X|1|a|G|1717
8B0X|1|a|U|1718
8B0X|1|a|A|1719
8B0X|1|a|G|1720
*
8B0X|1|a|U|1744
8B0X|1|a|G|1745
8B0X|1|a|A|1746
8B0X|1|a|A|1747
8B0X|1|a|A|1748

Current chains

Chain a

23S rRNA

Nearby chains