IL_10QM_086

3D structure

PDB id

10QM (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli 50S ribosomal subunit bound to compound 48a

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

CUUUGAAG*UGGAG

Length

13 nucleotides

Bulged bases

10QM|1|I|U|2132

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_10QM_086 not in the Motif Atlas

Homologous match to IL_3U4M_004

Geometric discrepancy: 0.4991

The information below is about IL_3U4M_004

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_90775.3

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

30

Unit IDs

10QM|1|I|C|2129
10QM|1|I|U|2130
10QM|1|I|U|2131
10QM|1|I|U|2132
10QM|1|I|G|2133
10QM|1|I|A|2134
10QM|1|I|A|2135
10QM|1|I|G|2136
*
10QM|1|I|U|2155
10QM|1|I|G|2156
10QM|1|I|G|2157
10QM|1|I|A|2158
10QM|1|I|G|2159

Current chains

Chain I

23S ribosomal RNA

Nearby chains