IL_10QM_094

3D structure

PDB id

10QM (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli 50S ribosomal subunit bound to compound 48a

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

AUA*UGUUU

Length

8 nucleotides

Bulged bases

10QM|1|I|U|2491

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_10QM_094 not in the Motif Atlas

Homologous match to IL_7A0S_086

Geometric discrepancy: 0.2861

The information below is about IL_7A0S_086

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform with extra cWW

Motif group

IL_36931.4

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

25

Unit IDs

10QM|1|I|A|2459
10QM|1|I|U|2460
10QM|1|I|A|2461
*
10QM|1|I|U|2489
10QM|1|I|G|2490
10QM|1|I|U|2491
10QM|1|I|U|2492
10QM|1|I|U|2493

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain J

5S ribosomal RNA; 5S rRNA

Chain L

50S ribosomal protein L3

Chain U

50S ribosomal protein L16