IL_10QM_095

3D structure

PDB id

10QM (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli 50S ribosomal subunit bound to compound 48a

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

CCAAG*CGACG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_10QM_095 not in the Motif Atlas

Homologous match to IL_7A0S_087

Geometric discrepancy: 0.1291

The information below is about IL_7A0S_087

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_87767.4

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

19

Unit IDs

10QM|1|I|C|2466
10QM|1|I|C|2467
10QM|1|I|A|2468
10QM|1|I|A|2469
10QM|1|I|G|2470
*
10QM|1|I|C|2480
10QM|1|I|G|2481
10QM|1|I|A|2482
10QM|1|I|C|2483
10QM|1|I|G|2484

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain U

50S ribosomal protein L16

Chain m

50S ribosomal protein L36