IL_10QM_112
3D structure
- PDB id
- 10QM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.coli 50S ribosomal subunit bound to compound 48a
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.49 Å
Loop
- Sequence
- GGUCCC*GAAAC
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_10QM_112 not in the Motif Atlas
- Geometric match to IL_8B0X_172
- Geometric discrepancy: 0.1585
- The information below is about IL_8B0X_172
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_18472.5
- Basepair signature
- cWW-tSW-R-L-R-L-R-cWW
- Number of instances in this motif group
- 3
Unit IDs
10QM|1|J|G|23
10QM|1|J|G|24
10QM|1|J|U|25
10QM|1|J|C|26
10QM|1|J|C|27
10QM|1|J|C|28
*
10QM|1|J|G|56
10QM|1|J|A|57
10QM|1|J|A|58
10QM|1|J|A|59
10QM|1|J|C|60
Current chains
- Chain J
- 5S ribosomal RNA
Nearby chains
- Chain I
- Large subunit ribosomal RNA; LSU rRNA
- Chain N
- Large ribosomal subunit protein uL5
- Chain W
- Large ribosomal subunit protein uL18
Coloring options: