IL_10ZZ_004

3D structure

PDB id

10ZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast co-transcriptional pre-60S assembly intermediate Pwp1 RNP*

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CUG*CCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_10ZZ_004 not in the Motif Atlas

Homologous match to IL_9PN5_007

Geometric discrepancy: 0.1327

The information below is about IL_9PN5_007

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.7

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

240

Unit IDs

10ZZ|1|1|C|125
10ZZ|1|1|U|126
10ZZ|1|1|G|127
*
10ZZ|1|1|C|141
10ZZ|1|1|C|142
10ZZ|1|1|G|143

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain G

60S ribosomal protein L8-A

Chain N

60S ribosomal protein L15-A