Motif IL_01003.7 Version IL_01003.7 of this group appears in releases 4.14 to 4.14

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name for chain		1		2		3	break		4		5		6	1-6	2-5	3-4	3-5
1	IL_6WBR_001	6WBR	0.4558	0	Isolated non-canonical cWW pair	B	RNA (94-MER)	G	26	G	27	A	28	*	U	41	A	42	C	43	cWW		cWW
2	IL_5T3K_001	5T3K	0.4468	1	Isolated non-canonical cWW pair	A+B	RNA (17-mer) + RNA (16-mer)	G	7	A	8	G	10	*	C	26	A	27	C	28	cWW	cwW	cWW
3	IL_9H3G_198	9H3G	0.3356	1	Isolated non-canonical cWW pair	h1	SSU rRNA	G	958	PSU	959	U	961	*	G	869	A	870	C	871	cWW		ncWW
4	IL_9PN5_183	9PN5	0.3318	1	Isolated non-canonical cWW pair	B5	SSU rRNA	G	957	U	958	U	960	*	G	868	A	869	C	870	cWW		ncWW
5	IL_8GLP_236	8GLP	0.3332	1	Isolated non-canonical cWW pair	S2	SSU rRNA	G	1014	U	1015	U	1017	*	G	925	A	926	C	927	cWW		ncWW
6	IL_9H3G_227	9H3G	0.4320	2	Isolated non-canonical cWW pair	h1	SSU rRNA	G	1373	G	1374	G	1377	*	U	1352	A	1353	C	1354	cWW	cWW	cWW
7	IL_7LYF_004	7LYF	0.4135	1	Isolated non-canonical cWW pair	A	Dengue virus SLA	C	51	G	52	C	54	*	G	70	A	71	G	72	cWW	cWW	cWW
8	IL_1XJR_003	1XJR	0.3724	1	Isolated non-canonical cWW pair	A	s2m RNA	C	16	A	17	C	18	*	G	32	G	34	G	35	cWW	cWW	cWW
9	IL_9PN5_212	9PN5	0.4145	1		B5	SSU rRNA	G	1383	A	1384	G	1385	*	C	1339	A	1341	C	1342	cWW	ncwW	cWW
10	IL_9H3G_225	9H3G	0.4352	1		h1	SSU rRNA	G	1386	A	1387	G	1388	*	C	1340	G	1342	C	1343	cWW	cWW	cWW
11	IL_4P3U_001	4P3U	0.3068	0	Isolated non-canonical cWW pair	B+A	RNA (23-mer)	G	42	U	43	C	44	*	G	5	U	6	C	7	cWW		cWW
12	IL_4V83_235	4V83	0.3119	0	Isolated non-canonical cWW pair	CV	domain 3 of PSIC IGR IRES RNA	C	6153	U	6154	C	6155	*	G	6173	U	6174	G	6175	cWW	ncWw	cWW
13	IL_8GLP_217	8GLP	0.2503	0	Isolated non-canonical cWW pair	S2	SSU rRNA	G	535	A	536	C	537	*	G	547	C	548	C	549	cWW	cWWa	ncWW
14	IL_7A0S_042	7A0S	0.2794	0	Isolated non-canonical cWW pair	X	LSU rRNA	C	1218	C	1219	G	1220	*	C	1252	C	1253	G	1254	cWW	ncWB	cWW
15	IL_8GLP_321	8GLP	0.2713	0	Isolated non-canonical cWW pair	S2	SSU rRNA	A	519	A	520	A	521	*	PSU	34	C	35	PSU	36	cWW	cWW	cWW
16	IL_4M4O_001	4M4O	0.2438	0	Isolated non-canonical cWW pair	B	RNA (59-MER)	C	6	A	7	U	8	*	A	52	C	53	G	54	cWW	cWWa	cWW
17	IL_9H3G_007	9H3G	0.1592	0	Isolated non-canonical cWW pair	3+A	5.8S rRNA + LSU rRNA	C	160	A	161	C	162	*	G	1	C	2	G	3	cWW	cWWa	cWW
18	IL_9SUM_194	9SUM	0.2162	0	Isolated non-canonical cWW pair (H)	CA	SSU rRNA	C	1143	C	1144	U	1145	*	G	1440	C	1441	G	1442	cWW	ncWB	cWW
19	IL_9H3G_213	9H3G	0.2316	0	Isolated non-canonical cWW pair	h1	SSU rRNA	C	1174	C	1175	PSU	1176	*	G	1467	C	1468	G	1469	cWW	ncWB	cWW
20	IL_9PN5_198	9PN5	0.2190	0	Isolated non-canonical cWW pair	B5	SSU rRNA	C	1173	C	1174	U	1175	*	G	1464	C	1465	G	1466	cWW	ncWB	cWW
21	IL_8CRE_446	8CRE	0.2739	0	Isolated non-canonical cWW pair	CM	SSU rRNA	C	1158	C	1159	U	1160	*	G	1450	C	1451	G	1452	cWW	ncWB	cWW
22	IL_9H3G_117	9H3G	0.2574	0	Isolated non-canonical cWW pair	A	LSU rRNA	G	2862	A	2863	PSU	2864	*	G	2823	C	2824	PSU	2825	cWW	cWWa	cWW
23	IL_4V9F_017	4V9F	0.2152	0	Isolated non-canonical cWW pair	0	LSU rRNA	A	597	C	598	G	599	*	C	558	U	559	U	560	cWW	cWW	cWW
24	IL_3RW6_004	3RW6	0.2725	0	Isolated non-canonical cWW pair	H	constitutive transport element(CTE)of Mason-Pfizer monkey virus RNA	C	24	C	25	G	26	*	C	33	U	34	G	35	cWW	cWW	cWW
25	IL_7ECP_003	7ECP	0.1977	0	Isolated non-canonical cWW pair	C+D	RNA (12-mer)	G	3	C	4	C	5	*	G	8	U	9	C	10	cWW	cWW	cWW
26	IL_7ECP_004	7ECP	0.2117	0	Isolated non-canonical cWW pair	D+C	RNA (12-mer)	G	3	C	4	C	5	*	G	8	U	9	C	10	cWW	cWW	cWW
27	IL_4LFB_063	4LFB	0.2712	0	Isolated non-canonical cWW pair	A	SSU rRNA	G	1435	U	1436	C	1437	*	G	1464	C	1465	C	1466	cWW	cWW	cWW
28	IL_4LFB_010	4LFB	0.2381	0	Isolated non-canonical cWW pair	A	SSU rRNA	C	186	C	187	C	188	*	G	190\|\|\|K	U	190\|\|\|L	G	191	cWW	cWW	cWW
29	IL_9H3G_027	9H3G	0.2396	0	Isolated non-canonical cWW pair	A	LSU rRNA	C	801	C	802	OMU	803	*	A	680	U	681	G	682	cWW	cWW	cWW
30	IL_9PN5_044	9PN5	0.2474	0	Isolated non-canonical cWW pair	A1	LSU rRNA	A	1136	C	1137	U	1138	*	A	1120	U	1121	U	1122	cWW	cWW	cWW
31	IL_9H3G_052	9H3G	0.3010	0	Isolated non-canonical cWW pair	A	LSU rRNA	A	1145	C	1146	U	1147	*	A	1129	U	1130	PSU	1131	cWW	cWW	cWW
32	IL_9SUM_044	9SUM	0.2851	0	Isolated non-canonical cWW pair (H)	A	LSU rRNA	A	1083	C	1084	U	1085	*	A	1067	U	1068	U	1069	cWW	cWW	cWW
33	IL_8OI5_049	8OI5	0.2466	0	Isolated non-canonical cWW pair	1	LSU rRNA	A	1132	C	1133	U	1134	*	A	1116	U	1117	U	1118	cWW	cWW	cWW
34	IL_7A0S_020	7A0S	0.1950	0	Isolated non-canonical cWW pair	X	LSU rRNA	G	754	C	755	C	756	*	G	767	U	768	C	769	cWW	cWW	cWW
35	IL_8OI5_023	8OI5	0.2010	0	Isolated non-canonical cWW pair	1	LSU rRNA	G	666	U	667	C	668	*	G	788	C	789	U	790	cWW	cWW	cWW
36	IL_9PN5_020	9PN5	0.2134	0	Isolated non-canonical cWW pair	A1	LSU rRNA	G	668	U	669	C	670	*	G	792	C	793	U	794	cWW	cWW	cWW
37	IL_9SUM_019	9SUM	0.1977	0	Isolated non-canonical cWW pair (H)	A	LSU rRNA	G	614	U	615	C	616	*	G	735	C	736	U	737	cWW	cWW	cWW
38	IL_8OI5_029	8OI5	0.2302	0	Isolated non-canonical cWW pair	1	LSU rRNA	C	799	C	800	G	801	*	C	934	U	935	G	936	cWW	cWW	cWW
39	IL_9PN5_026	9PN5	0.2167	0	Isolated non-canonical cWW pair	A1	LSU rRNA	C	803	C	804	G	805	*	C	938	U	939	G	940	cWW	cWW	cWW
40	IL_9SUM_025	9SUM	0.2049	0	Isolated non-canonical cWW pair (H)	A	LSU rRNA	C	746	C	747	G	748	*	C	881	U	882	G	883	cWW	cWW	cWW
41	IL_9AXU_025	9AXU	0.2018	0	Isolated non-canonical cWW pair	2	LSU rRNA	C	835	C	836	G	837	*	C	970	U	971	G	972	cWW	cWW	cWW
42	IL_8GLP_289	8GLP	0.1970	0	Isolated non-canonical cWW pair	L5	LSU rRNA	C	1520	C	1521	OMG	1522	*	C	1655	U	1656	G	1657	cWW	cWW	cWW
43	IL_9H3G_033	9H3G	0.2023	0	Isolated non-canonical cWW pair	A	LSU rRNA	C	812	C	813	OMG	814	*	C	947	U	948	G	949	cWW	cWW	cWW
44	IL_7A0S_014	7A0S	0.1969	0	Isolated non-canonical cWW pair	X	LSU rRNA	U	685	C	686	G	687	*	C	819	U	820	A	821	cWW	cWW	cWW
45	IL_4WF9_020	4WF9	0.1937	0	Isolated non-canonical cWW pair	X	LSU rRNA	C	717	C	718	G	719	*	C	851	U	852	G	853	cWW	cWW	cWW
46	IL_8B0X_079	8B0X	0.2224	0	Isolated non-canonical cWW pair	a	LSU rRNA	C	674	C	675	G	676	*	C	808	U	809	G	810	cWW	cWW	cWW
47	IL_9DFE_015	9DFE	0.1974	0	Isolated non-canonical cWW pair	1A	LSU rRNA	C	672	C	673	G	674	*	C	806	U	807	G	808	cWW	cWW	cWW
48	IL_8OI5_047	8OI5	0.2016	0	Isolated non-canonical cWW pair	1	LSU rRNA	C	1065	U	1066	U	1067	*	G	1083	U	1084	G	1085	cWW	ncwW	cWW
49	IL_9SUM_042	9SUM	0.2399	0	Isolated non-canonical cWW pair (H)	A	LSU rRNA	C	1016	U	1017	U	1018	*	G	1034	U	1035	G	1036	cWW	ncwW	cWW
50	IL_9PN5_042	9PN5	0.2214	0	Isolated non-canonical cWW pair	A1	LSU rRNA	C	1069	U	1070	U	1071	*	G	1087	U	1088	G	1089	cWW	ncwW	cWW
51	IL_9H3G_023	9H3G	0.1710	0	Isolated non-canonical cWW pair	A	LSU rRNA	G	627	C	628	C	629	*	G	497	A	498	C	499	cWW	cWW	cWW
52	IL_9TEL_002	9TEL	0.2155	0	Isolated non-canonical cWW pair	X+Y	RNA (10-mer)	G	2	C	3	U	4\|\|A	*	A	7	A	8	C	9	cWW	cWW	cWW
53	IL_7A0S_026	7A0S	0.2230	0	Isolated non-canonical cWW pair	X	LSU rRNA	A	936	C	937	G	938	*	C	864	A	865	U	866	cWW	cWW	cWW
54	IL_9H3G_125	9H3G	0.1875	0	Isolated non-canonical cWW pair	A	LSU rRNA	A	2925	C	2926	C	2927	*	G	2917	A	2918	U	2919	cWW	cWW	cWW
55	IL_9PN5_108	9PN5	0.2025	0	Isolated non-canonical cWW pair	A1	LSU rRNA	A	2926	C	2927	C	2928	*	G	2918	A	2919	U	2920	cWW	cWW	cWW
56	IL_8GLP_152	8GLP	0.1823	0	Isolated non-canonical cWW pair	L5	LSU rRNA	A	4503	C	4504	C	4505	*	G	4495	A	4496	U	4497	cWW	cWW	cWW
57	IL_9SUM_106	9SUM	0.2059	0	Isolated non-canonical cWW pair (H)	A	LSU rRNA	A	2826	C	2827	C	2828	*	G	2818	A	2819	U	2820	cWW	cWW	cWW
58	IL_8OI5_112	8OI5	0.1821	0	Isolated non-canonical cWW pair	1	LSU rRNA	A	2898	C	2899	C	2900	*	G	2890	A	2891	U	2892	cWW	cWW	cWW
59	IL_4PDQ_004	4PDQ	0.1922	0	Isolated non-canonical cWW pair	A+B	RNA (23-mer)	G	19	U	20	C	21	*	G	28	U	29	C	30	cWW	ncwW	cWW
60	IL_9E6Q_096	9E6Q	0.2178	0	Isolated non-canonical cWW pair	1	LSU rRNA	C	2836	C	2837	A	2838	*	U	2799	A	2800	G	2801	cWW	cWW	cWW
61	IL_4V9K_064	4V9K	0.2242	0	Isolated non-canonical cWW pair	AW	tRNA	C	62	C	63	G	64	*	C	50	A	51	G	52	cWW	ncWWa	cWW
62	IL_7KJT_001	7KJT	0.2952	0	Isolated non-canonical cWW pair	A	tRNA	G	69	C	70	C	71	*	G	2	C	3	C	4	ncWW		cWW
63	IL_1ZZ5_002	1ZZ5	0.2564	0	Isolated non-canonical cWW pair	B+A	RNA (14-mer)	G	24	U	25	C	26	*	G	10	U	11	C	12	cWW	ncwW	cWW
64	IL_8CRE_391	8CRE	0.1920	0	Isolated non-canonical cWW pair	CM	SSU rRNA	U	35	C	36	U	37	*	A	469	U	470	A	471	cWW	cWW	cWW
65	IL_9PN5_143	9PN5	0.2308	0	Isolated non-canonical cWW pair	B5	SSU rRNA	A	471	U	472	A	473	*	U	35	C	36	U	37	cWW	cWW	cWW
66	IL_9SUM_138	9SUM	0.2049	0	Isolated non-canonical cWW pair (H)	CA	SSU rRNA	U	35	C	36	U	37	*	A	460	U	461	A	462	cWW	ncWW	cWW
67	IL_9H3G_156	9H3G	0.2667	0	Isolated non-canonical cWW pair	h1	SSU rRNA	A	473	U	474	A	475	*	U	35	C	36	U	37	cWW	cWW	cWW
68	IL_4ZC7_004	4ZC7	0.2493	0	Isolated non-canonical cWW pair	A+B	RNA duplex	G	19	U	20	C	21	*	G	28	U	29	C	30	cWW	ncWw	cWW
69	IL_4LFB_069	4LFB	0.2412	0	Isolated non-canonical cWW pair	A	SSU rRNA	G	1494	U	1495	C	1496	*	G	1405	U	1406	5MC	1407	cWW	ncwW	cWW
70	IL_4PDQ_001	4PDQ	0.2657	0	Isolated non-canonical cWW pair	B+A	RNA (23-mer)	G	42	U	43	C	44	*	G	5	U	6	C	7	cWW		cWW
71	IL_4V9F_023	4V9F	0.2147	0	Isolated non-canonical cWW pair	0	LSU rRNA	C	763	C	764	G	765	*	C	899	U	900	G	901	cWW	cWW	cWW
72	IL_8OI5_008	8OI5	0.2116	0	Isolated non-canonical cWW pair	1	LSU rRNA	C	140	C	141	G	142	*	C	124	U	125	G	126	cWW	cWW	cWW
73	IL_9PN5_007	9PN5	0.1886	0	Isolated non-canonical cWW pair	A1	LSU rRNA	C	141	C	142	G	143	*	C	125	U	126	G	127	cWW	cWW	cWW
74	IL_6M6R_001	6M6R	0.1657	0	Isolated non-canonical cWW pair	B	RNA (8-mer)	G	5\|\|\|\|7_555	C	6\|\|\|\|7_555	C	7\|\|\|\|7_555	*	G	2	C	3	C	4	cWW		cWW
75	IL_5Y7M_007	5Y7M	0.1639	0	Isolated non-canonical cWW pair	D	RNA (52-MER)	A	11	C	12	C	13	*	G	37	A	38	U	39	cWW	cWW	cWW
76	IL_4WF9_042	4WF9	0.1617	0	Isolated non-canonical cWW pair	X	LSU rRNA	G	1081	C	1082	G	1083	*	C	1160	A	1161	C	1162	cWW	ncWW	cWW
77	IL_9E6Q_036	9E6Q	0.1495	0	Isolated non-canonical cWW pair	1	LSU rRNA	C	1043	A	1044	G	1045	*	C	970	C	971	G	972	cWW	ncWWa	cWW
78	IL_4WF9_083	4WF9	0.1737	0	Isolated non-canonical cWW pair	X	LSU rRNA	C	2111	C	2112	U	2113	*	A	2260	A	2261	G	2262	cWW	ncWWa	cWW
79	IL_4V9F_105	4V9F	0.1569	0	Isolated non-canonical cWW pair	9	5S rRNA	C	107	C	108	G	109	*	C	72	A	73	G	74	cWW	cWW	cWW
80	IL_9SUM_014	9SUM	0.1813	0		A	LSU rRNA	G	571	U	572	U	573	*	A	422	C	423	C	424	cWW	cWW	cWW
81	IL_8B0X_177	8B0X	0.1767	0	Isolated non-canonical cWW pair	A	SSU rRNA	G	1494	U	1495	C	1496	*	G	1405	U	1406	5MC	1407	cWW		cWW
82	IL_9H3G_235	9H3G	0.1988	0	Isolated non-canonical cWW pair	h1	SSU rRNA	G	1761	U	1762	C	1763	*	G	1644	U	1645	C	1646	cWW		cWW
83	IL_9PN5_222	9PN5	0.1840	0	Isolated non-canonical cWW pair	B5	SSU rRNA	G	1757	U	1758	C	1759	*	G	1642	U	1643	C	1644	cWW		cWW
84	IL_8GLP_276	8GLP	0.1789	0	Isolated non-canonical cWW pair	S2	SSU rRNA	G	1826	U	1827	C	1828	*	G	1706	U	1707	C	1708	cWW		cWW
85	IL_8CRE_468	8CRE	0.2017	0	Isolated non-canonical cWW pair	CM	SSU rRNA	G	1744	U	1745	C	1746	*	G	1629	U	1630	C	1631	cWW		cWW
86	IL_4ZC7_001	4ZC7	0.2230	0	Isolated non-canonical cWW pair	A+B	RNA duplex	G	5	U	6	C	7	*	G	42	U	43	C	44	cWW	ncwW	cWW
87	IL_9AXU_020	9AXU	0.1612	0	Isolated non-canonical cWW pair	2	LSU rRNA	G	824	C	825	U	826	*	A	693	U	694	C	695	cWW	cWW	cWW
88	IL_9AXU_044	9AXU	0.2012	0	Isolated non-canonical cWW pair	2	LSU rRNA	A	1167	C	1168	U	1169	*	A	1151	U	1152	U	1153	cWW	cWW	cWW
89	IL_4KNQ_002	4KNQ	0.1667	0	Isolated non-canonical cWW pair	B	RNA (20-mer)	C	207	C	208	G	209	*	C	213\|\|\|\|4_555	C	214\|\|\|\|4_555	G	215\|\|\|\|4_555	cWW		cWW
90	IL_4E48_006	4E48	0.1771	0	Isolated non-canonical cWW pair	B+A	RNA (20-mer)	C	22	U	23	G	24	*	C	17	U	18	G	19	cWW	ncwW	cWW
91	IL_4JGN_002	4JGN	0.1254	0	Isolated non-canonical cWW pair	E	RNA (20-mer)	C	508	U	509	G	510	*	C	514\|\|\|\|4_555	U	515\|\|\|\|4_555	G	516\|\|\|\|4_555	cWW	ncwW	cWW
92	IL_3MEI_002	3MEI	0.1363	0	Isolated non-canonical cWW pair	B+A	RNA (23-mer)	G	13	C	14	C	15	*	G	8	C	9	C	10	cWW	ncWB	cWW
93	IL_5CCB_001	5CCB	0.1339	0	Isolated non-canonical cWW pair	N	tRNA	A	31	C	32	U	33	*	A	37	A	38	U	39	cWW	cWW	cWW
94	IL_6OL3_002	6OL3	0.0931	0	Isolated non-canonical cWW pair	C	VA RNA	G	78	C	79	C	80	*	G	53	A	54	C	55	cWW	cWW	cWW
95	IL_8CRE_425	8CRE	0.0462	0	Isolated non-canonical cWW pair	CM	SSU rRNA	G	622	C	623	U	624	*	A	958	A	959	C	960	cWW	cWW	cWW
96	IL_9SUM_169	9SUM	0.0000	0	Isolated non-canonical cWW pair (H)	CA	SSU rRNA	G	613	C	614	U	615	*	A	943	A	944	C	945	cWW	cWW	cWW
97	IL_9PN5_175	9PN5	0.0438	0	Isolated non-canonical cWW pair	B5	SSU rRNA	G	624	C	625	U	626	*	A	973	A	974	C	975	cWW	cWW	cWW
98	IL_9H3G_190	9H3G	0.0518	0	Isolated non-canonical cWW pair	h1	SSU rRNA	G	626	C	627	U	628	*	A	974	A2M	975	C	976	cWW	cWW	cWW
99	IL_8GLP_227	8GLP	0.0604	0	Isolated non-canonical cWW pair	S2	SSU rRNA	G	673	C	674	U	675	*	A	1030	A2M	1031	C	1032	cWW	cWW	cWW
100	IL_6IA2_001	6IA2	0.1296	0	Isolated non-canonical cWW pair	B+A	RNA (19-mer)	C	16	C	17	C	18	*	G	2	A	3	G	4	cWW	cWW	cWW
101	IL_7ZLQ_002	7ZLQ	0.1411	0	Isolated non-canonical cWW pair	E+D	RNA (13-mer)	G	5	C	6	C	7	*	G	5	C	6	C	7	cWW	ncWB	cWW
102	IL_9AXU_007	9AXU	0.1648	0	Isolated non-canonical cWW pair	2	LSU rRNA	C	147	C	148	G	149	*	C	125	U	126	G	127	cWW	cWW	cWW
103	IL_8GLP_233	8GLP	0.1421	0	Isolated non-canonical cWW pair	S2	SSU rRNA	G	910	C	911	C	912	*	G	874	A	875	C	876	cWW	cWW	cWW
104	IL_5AOX_001	5AOX	0.1664	0	Isolated non-canonical cWW pair	C	ALU JO CONSENSUS RNA	G	9	C	10	G	11	*	C	18	A	19	C	20	cWW	cWW	cWW
105	IL_1U9S_007	1U9S	0.1439	0	Isolated non-canonical cWW pair	A	RNase P class A	G	177	C	178	G	179	*	C	191	A	192	C	193	cWW	cWW	cWW
106	IL_5Y85_006	5Y85	0.1508	0	Isolated non-canonical cWW pair	D+C	DNA/RNA (50-MER)	G	4	C	5	C	6	*	G	13	A	14	C	15	cWW	cWW	cWW
107	IL_9SUM_074	9SUM	0.1191	0	Isolated non-canonical cWW pair (H)	A	LSU rRNA	G	1882	C	1883	U	1884	*	A	2021	A	2022	C	2023	cWW	cWW	cWW
108	IL_8GLP_109	8GLP	0.1165	0	Isolated non-canonical cWW pair	L5	LSU rRNA	G	2889	C	2890	U	2891	*	A	3610	A	3611	C	3612	cWW	cWW	cWW
109	IL_9PN5_078	9PN5	0.1408	0	Isolated non-canonical cWW pair	A1	LSU rRNA	G	1940	C	1941	U	1942	*	A	2106	A	2107	C	2108	cWW	cWW	cWW
110	IL_9H3G_089	9H3G	0.1477	0	Isolated non-canonical cWW pair	A	LSU rRNA	G	1942	C	1943	U	1944	*	A	2105	A	2106	C	2107	cWW	cWW	cWW
111	IL_9AXU_076	9AXU	0.1294	0	Isolated non-canonical cWW pair	2	LSU rRNA	G	1995	C	1996	U	1997	*	A	2194	A	2195	C	2196	cWW	cWW	cWW
112	IL_8OI5_082	8OI5	0.1322	0	Isolated non-canonical cWW pair	1	LSU rRNA	G	1936	C	1937	U	1938	*	A	2084	A	2085	C	2086	cWW	cWW	cWW
113	IL_9AXU_042	9AXU	0.2218	0	Isolated non-canonical cWW pair	2	LSU rRNA	G	1119	U	1120	G	1121	*	C	1101	U	1102	U	1103	cWW	ncwW	cWW
114	IL_3GM7_004	3GM7	0.1761	0	Isolated non-canonical cWW pair	G+H	RNA (18-mer)	C	10	U	11	G	12	*	C	7	U	8	G	9	cWW	ncwW	cWW
115	IL_1UN6_005	1UN6	0.1662	0	Isolated non-canonical cWW pair	F	5S RIBOSOMAL RNA	C	79	U	80	G	81	*	C	95	U	96	G	97	cWW	ncwW	cWW
116	IL_8GLP_283	8GLP	0.1768	0	Isolated non-canonical cWW pair	S2	SSU rRNA	C	1739	C	1740	U	1741	*	A	1793	C	1794	G	1795	cWW	ncWB	cWW
117	IL_4E48_004	4E48	0.1614	0	Isolated non-canonical cWW pair	B+A	RNA (20-mer)	C	28	U	29	G	30	*	C	11	U	12	G	13	cWW	ncwW	cWW
118	IL_4E48_001	4E48	0.1694	0	Isolated non-canonical cWW pair	A+B	RNA (20-mer)	C	2	U	3	G	4	*	C	37	U	38	G	39	cWW		cWW
119	IL_4E48_002	4E48	0.1507	0	Isolated non-canonical cWW pair	B+A	RNA (20-mer)	C	34	U	35	G	36	*	C	5	U	6	G	7	cWW		cWW
120	IL_1YZ9_002	1YZ9	0.1310	0	Isolated non-canonical cWW pair	F+E	RNA (11-mer)	A	15	C	16	U	17	*	A	4	C	5	U	6	cWW	ncWB	cWW
121	IL_4E48_003	4E48	0.1504	0	Isolated non-canonical cWW pair	A+B	RNA (20-mer)	C	8	U	9	G	10	*	C	31	U	32	G	33	cWW		cWW
122	IL_3SZX_001	3SZX	0.1720	0	Isolated non-canonical cWW pair	A+B	RNA (19-mer)	C	7	U	8	G	9	*	C	13	U	14	G	15	cWW		cWW
123	IL_3GM7_006	3GM7	0.1439	0	Isolated non-canonical cWW pair	G+H	RNA (18-mer)	C	16	U	17	G	18	*	C	1	U	2	G	3	cWW	ncwW	cWW
124	IL_5VCI_002	5VCI	0.1397	0	Isolated non-canonical cWW pair	B+A	RNA (12-mer)	C	7	U	8	G	9	*	C	4	U	5	G	6	cWW	ncwW	cWW
125	IL_5MWI_002	5MWI	0.1407	0	Isolated non-canonical cWW pair	A	RNA G(CUG)8C duplex	C	20\|\|\|\|4_555	U	21\|\|\|\|4_555	G	22\|\|\|\|4_555	*	C	5	U	6	G	7	cWW		cWW
126	IL_3GM7_003	3GM7	0.1566	0	Isolated non-canonical cWW pair	H+G	RNA (18-mer)	C	10	U	11	G	12	*	C	7	U	8	G	9	cWW	ncwW	cWW
127	IL_8GLP_039	8GLP	0.1274	0	Isolated non-canonical cWW pair	L5	LSU rRNA	C	922	C	923	C	924	*	G	740	C	741	G	742	cWW	ncWB	cWW
128	IL_4E59_001	4E59	0.1210	0	Isolated non-canonical cWW pair	B+A	RNA duplex containing CCG repeats	C	2	C	3	G	4	*	C	2	C	3	G	4	cWW	ncWB	cWW
129	IL_3GM7_002	3GM7	0.1339	0	Isolated non-canonical cWW pair	G+H	RNA (18-mer)	C	4	U	5	G	6	*	C	13	U	14	G	15	cWW		cWW
130	IL_5MWI_004	5MWI	0.1395	0	Isolated non-canonical cWW pair	A	RNA G(CUG)8C duplex	C	14\|\|\|\|4_555	U	15\|\|A\|\|4_555	G	16\|\|\|\|4_555	*	C	11	U	12\|\|A	G	13	cWW		cWW
131	IL_3GM7_005	3GM7	0.1425	0	Isolated non-canonical cWW pair	G+H	RNA (18-mer)	C	13	U	14	G	15	*	C	4	U	5	G	6	cWW		cWW
132	IL_2ZKO_001	2ZKO	0.1711	0	Isolated non-canonical cWW pair	D+C	RNA (21-mer)	U	9	U	10	A	11	*	U	9	U	10	A	11	cWW		cWW
133	IL_3GM7_001	3GM7	0.1558	0	Isolated non-canonical cWW pair	H+G	RNA (18-mer)	C	16	U	17	G	18	*	C	1	U	2	G	3	cWW		cWW
134	IL_1RPU_001	1RPU	0.1731	0	Isolated non-canonical cWW pair	C+D	RNA (21-mer)	U	9\|\|A	C	10\|\|A	A	11\|\|A	*	U	9\|\|A	C	10\|\|A	A	11\|\|A	cWW	ncWB	cWW
135	IL_4P3U_012	4P3U	0.2128	0	Isolated non-canonical cWW pair	C+D	RNA (23-mer)	G	19	U	20	C	21	*	G	28	U	29	C	30	cWW	ncwW	cWW
136	IL_6IA2_004	6IA2	0.1544	0	Isolated non-canonical cWW pair	B+A	RNA (19-mer)	C	7	C	8	C	9	*	G	11	A	12	G	13	cWW	cWW	cWW
137	IL_8GLP_255	8GLP	0.1700	0	Isolated non-canonical cWW pair	S2	SSU rRNA	G	1510	U	1511	C	1512	*	G	1270	C	1271	C	1272	cWW		cWW
138	IL_5MWI_003	5MWI	0.1685	0	Isolated non-canonical cWW pair	A	RNA G(CUG)8C duplex	C	17\|\|\|\|4_555	U	18\|\|\|\|4_555	G	19\|\|\|\|4_555	*	C	8	U	9	G	10	cWW		cWW
139	IL_4E48_005	4E48	0.1663	0	Isolated non-canonical cWW pair	A+B	RNA (20-mer)	C	14	U	15	G	16	*	C	25	U	26	G	27	cWW		cWW
140	IL_6IA2_002	6IA2	0.1632	0	Isolated non-canonical cWW pair	A+B	RNA (19-mer)	C	7	C	8	C	9	*	G	11\|\|A	A	12	G	13	cWW	cWW	cWW
141	IL_6IA2_005	6IA2	0.1526	0	Isolated non-canonical cWW pair	A+B	RNA (19-mer)	C	16	C	17	C	18	*	G	2	A	3	G	4	cWW	cWW	cWW
142	IL_7QQP_008	7QQP	0.2285	0	Isolated non-canonical cWW pair	C+A	AAVS1 off-target3 target strand	DT	5	DC	6	DT	7	*	A	14	C	15	A	16	cWW	ncWB	cWW
143	IL_7Y2P_002	7Y2P	0.2194	0	Isolated non-canonical cWW pair	A+B	RNA (13-mer)	C	9	U	10	G	11	*	C	3	U	4	G	5	cWW		cWW
144	IL_7Y2P_001	7Y2P	0.2227	0	Isolated non-canonical cWW pair	B+A	RNA (13-mer)	C	9	U	10	G	11	*	C	3	U	4	G	5	cWW		cWW
145	IL_8AF0_001	8AF0	0.1955	0	Isolated non-canonical cWW pair	C+D	RNA (19-mer)	C	31	C	32	U	33	*	A	37	C	38	G	39	cWW		cWW
146	IL_1Z79_001	1Z79	0.1498	0	Isolated non-canonical cWW pair	B+A	RNA 5'-R(GPCPAPGPAP(A5M)PUPUPAPAPAPUPCPUPGPC)-3'	A	5	A5M	6	U	7	*	A	10	A	11	U	12	cWW	cWW	cWW
147	IL_1Z7F_005	1Z7F	0.1927	0	Isolated non-canonical cWW pair	B+C	RNA (16-mer)	A	5	C	6	U	7	*	A	26	A	27	U	28	cWW	cWW	cWW
148	IL_7KFN_001	7KFN	0.2186	0	Isolated non-canonical cWW pair	C+B	Gli1 1W5 23mer RNA	C	8	C	9	C	10	*	G	14	A	15	G	16	cWW	cWW	cWW
149	IL_9OP3_001	9OP3	0.2188	0	Isolated non-canonical cWW pair	D+C	RNA 32mer 2F Bottom Strand	C	17	C	18	C	19	*	G	14	A	15	G	16	cWW	cWW	cWW
150	IL_8CRE_448	8CRE	0.2088	0	Isolated non-canonical cWW pair	CM	SSU rRNA	G	1434	U	1435	U	1436	*	G	1198	U	1199	C	1200	cWW	ncwW	ncWW
151	IL_9SUM_196	9SUM	0.1815	0	Isolated non-canonical cWW pair (H)	CA	SSU rRNA	G	1424	U	1425	U	1426	*	G	1183	U	1184	C	1185	cWW	ncwW	cWW
152	IL_9H3G_215	9H3G	0.1773	0	Isolated non-canonical cWW pair	h1	SSU rRNA	G	1451	U	1452	U	1453	*	G	1214	PSU	1215	OMC	1216	cWW	ncwW	cWW
153	IL_9SUM_172	9SUM	0.1950	0	Isolated non-canonical cWW pair (H)	CA	SSU rRNA	C	673	C	674	A	675	*	U	635	U	636	G	637	cWW	ncWW	cWW
154	IL_9H3G_137	9H3G	0.1417	0	Isolated non-canonical cWW pair	A	LSU rRNA	U	3190	C	3191	U	3192	*	G	3182	A	3183	G	3184	ncWW	ncWW	ncWWa
155	IL_7OG0_001	7OG0	0.1483	0	Isolated non-canonical cWW pair	D+E	RNA (19-mer)	C	9	C	10	G	11	*	C	9\|\|\|\|2_376	C	10\|\|\|\|2_376	G	11\|\|\|\|2_376	cWW		cWW
156	IL_3SZX_003	3SZX	0.1590	0	Isolated non-canonical cWW pair	A+B	RNA (19-mer)	C	13	U	14	G	15	*	C	7	U	8	G	9	cWW	ncwW	cWW
157	IL_8OI5_121	8OI5	0.1974	0	Isolated non-canonical cWW pair	1	LSU rRNA	C	3134	A	3135	C	3136	*	G	3249	C	3250	G	3251	cWW	ncWWa	cWW
158	IL_1G2J_001	1G2J	0.2078	0	Isolated non-canonical cWW pair	A	RNA (8-mer)	C	3	PYY	4	G	5	*	C	3\|\|\|\|12_565	PYY	4\|\|\|\|12_565	G	5\|\|\|\|12_565	cWW		cWW
159	IL_7ECO_005	7ECO	0.2289	0	Isolated non-canonical cWW pair	F+E	RNA (12-mer)	G	8	U	9	C	10	*	G	3	U	4	C	5	cWW		cWW
160	IL_4KNQ_003	4KNQ	0.2338	0	Isolated non-canonical cWW pair	B	RNA (20-mer)	C	210\|\|\|\|4_555	C	211\|\|\|\|4_555	G	212\|\|\|\|4_555	*	C	210	C	211	G	212	cWW		cWW
161	IL_4JGN_003	4JGN	0.2107	0	Isolated non-canonical cWW pair	E	RNA (20-mer)	C	511\|\|\|\|4_555	U	512\|\|\|\|4_555	G	513\|\|\|\|4_555	*	C	511	U	512	G	513	cWW	ncwW	cWW
162	IL_4J39_001	4J39	0.2335	0	Isolated non-canonical cWW pair	B	RNA (19-mer)	G	9	C	10	C	11	*	G	9\|\|\|\|4_555	C	10\|\|\|\|4_555	C	11\|\|\|\|4_555	cWW		cWW
163	IL_1ZH5_001	1ZH5	0.2126	0	Isolated non-canonical cWW pair	C+D	RNA (9-mer)	C	3	U	4	G	5	*	C	3	U	4	G	5	cWW	ncwW	cWW
164	IL_9H3G_105	9H3G	0.1930	0	Isolated non-canonical cWW pair	A	LSU rRNA	C	2425	C	2426	G	2427	*	C	2599	A	2600	G	2601	cWW	ncWWa	cWW
165	IL_5AY2_001	5AY2	0.2236	0	Isolated non-canonical cWW pair	B+A	RNA (12-mer)	A	8	C	9	U	10	*	A	3	C	4	U	5	cWW		cWW
166	IL_5AY2_003	5AY2	0.2135	0	Isolated non-canonical cWW pair	B+A	RNA (12-mer)	A	3	C	4	U	5	*	A	8	C	9	U	10	cWW		cWW
167	IL_7ECO_006	7ECO	0.2203	0	Isolated non-canonical cWW pair	E+F	RNA (12-mer)	G	8	U	9	C	10	*	G	3	U	4	C	5	cWW		cWW
168	IL_7A0S_031	7A0S	0.2296	0	Isolated non-canonical cWW pair	X	LSU rRNA	G	963	A	964	G	965	*	U	974	C	975	C	976	cWW	cWW	cWW
169	IL_9DFE_033	9DFE	0.2138	0	Isolated non-canonical cWW pair	1A	LSU rRNA	G	952	A	953	G	954	*	U	963	C	964	C	965	cWW	cWW	cWW
170	IL_8GLP_197	8GLP	0.2186	0	Isolated non-canonical cWW pair	S2	SSU rRNA	U	110	A	111	U	112	*	A	349	C	350	G	351	cWW	cWWa	cWW
171	IL_4AOB_005	4AOB	0.2392	0	Isolated non-canonical cWW pair	A	SAM-I riboswitch	G	71	A	72	G	73	*	C	78	G	79	U	80	cWW	ncWW	cWW
172	IL_9AXU_101	9AXU	0.1809	0	Isolated non-canonical cWW pair	2	LSU rRNA	G	3007	C	3008	G	3009	*	C	2984	A	2985	U	2986	cWW	ncWWa	cWW
173	IL_8OI5_110	8OI5	0.1565	0	Isolated non-canonical cWW pair	1	LSU rRNA	G	2884	C	2885	G	2886	*	C	2861	A	2862	U	2863	cWW	ncWWa	cWW
174	IL_9PN5_105	9PN5	0.1625	0	Isolated non-canonical cWW pair	A1	LSU rRNA	G	2912	C	2913	G	2914	*	C	2889	A	2890	U	2891	cWW	ncWWa	cWW
175	IL_9SUM_103	9SUM	0.1675	0		A	LSU rRNA	G	2812	C	2813	G	2814	*	C	2789	A	2790	U	2791	cWW	ncWW	cWW
176	IL_8GLP_149	8GLP	0.1661	0	Isolated non-canonical cWW pair	L5	LSU rRNA	G	4489	C	4490	G	4491	*	C	4466	A	4467	U	4468	cWW	ncWWa	cWW
177	IL_4YHW_002	4YHW	0.1796	0	Isolated non-canonical cWW pair	F+D	U6 snRNA fragment	C	68	C	69	U	70	*	A	11	C	12	G	13	cWW		cWW
178	IL_9H3G_060	9H3G	0.1433	0	Isolated non-canonical cWW pair	A	LSU rRNA	C	1299	A	1300	A	1301	*	U	1224	C	1225	G	1226	cWW	ncWWa	cWW
179	IL_7MLW_001	7MLW	0.1612	0	Isolated non-canonical cWW pair	F	Guanidine-I riboswitch	C	57	A	58	A	59	*	U	4	C	5	G	6	cWW	cWWa	cWW
180	IL_9AXU_105	9AXU	0.2449	0	Isolated non-canonical cWW pair	2	LSU rRNA	A	3021	C	3022	C	3023	*	G	3013	A	3014	U	3015	cWW	ncWW	cWW
181	IL_9SUM_171	9SUM	0.3007	0		CA	SSU rRNA	G	677	A	678	C	679	*	G	631	G	632	U	633	ncWW	cWW	cWW
182	IL_8AF0_004	8AF0	0.3777	0	Isolated non-canonical cWW pair	D+C	RNA (19-mer)	C	31	C	32	U	33	*	A	37	C	38	G	39	cWW		ncWW
183	IL_9SUM_220	9SUM	0.3792	0	Isolated non-canonical cWW pair (H)	CA	SSU rRNA	U	1625	A	1626	C	1627	*	G	1723	A	1724	A	1725	cWW	cwW	cWW
184	IL_7VFT_003	7VFT	0.3514	0	Isolated non-canonical cWW pair	A	RNA (23-mer)	C	11\|\|\|\|12_555	A	12\|\|\|\|12_555	G	13\|\|\|\|12_555	*	C	11	A	12	G	13	cWW		cWW
185	IL_4J50_002	4J50	0.3299	0	Isolated non-canonical cWW pair	B+A	RNA (19-mer)	C	10	A	11	G	12	*	C	10	A	11	G	12	cWW		cWW
186	IL_5ED1_002	5ED1	0.2722	0	Isolated non-canonical cWW pair	C+B	RNA (23-mer)	G	9	A	10	C	11	*	G	13	A	14	C	15	cWW	cwW	cWW
187	IL_8CRE_470	8CRE	0.3551	0	Isolated non-canonical cWW pair	CM	SSU rRNA	G	1735	A	1736	A	1737	*	U	1637	A	1638	C	1639	cWW	ncwW	cWW
188	IL_8GLP_278	8GLP	0.3442	0	Isolated non-canonical cWW pair	S2	SSU rRNA	G	1817	A	1818	A	1819	*	U	1714	A	1715	C	1716	cWW	cwW	cWW
189	IL_9PN5_224	9PN5	0.3027	0	Isolated non-canonical cWW pair	B5	SSU rRNA	G	1748	A	1749	A	1750	*	U	1650	A	1651	C	1652	cWW	cwW	cWW
190	IL_8GLP_025	8GLP	0.3084	0	Isolated non-canonical cWW pair	L5	LSU rRNA	C	691	A	692	C	693	*	G	462	A	463	G	464	cWW	cWw	cWW
191	IL_9H3G_237	9H3G	0.3020	0	Isolated non-canonical cWW pair	h1	SSU rRNA	G	1752	A	1753	A2M	1754	*	U	1652	A	1653	C	1654	cWW	cwW	cWW
192	IL_9H3G_022	9H3G	0.3185	0	Isolated non-canonical cWW pair	A	LSU rRNA	G	472	G	473	U	474	*	A	459	A	460	C	461	cWW	cWW	cWW
193	IL_8CRE_456	8CRE	0.3871	0	Isolated non-canonical cWW pair	CM	SSU rRNA	U	1275	G	1276	G	1277	*	C	1308	G	1309	A	1310	cWW		cWW
194	IL_9SUM_207	9SUM	0.3555	0	Isolated cWH basepair (H)	CA	SSU rRNA	U	1260	G	1261	G	1262	*	C	1293	G	1294	A	1295	cWW	ncWw	cWW
195	IL_8OI5_045	8OI5	0.3441	0	Isolated non-canonical cWW pair	1	LSU rRNA	A	1005	G	1006	A	1007	*	U	1035	A	1036	U	1037	cWW	cWW	cWW
196	IL_9PN5_041	9PN5	0.3263	0	Isolated non-canonical cWW pair	A1	LSU rRNA	A	1009	G	1010	A	1011	*	U	1039	A	1040	U	1041	cWW	cWW	cWW
197	IL_9SUM_041	9SUM	0.3340	0	Isolated non-canonical cWW pair (H)	A	LSU rRNA	A	956	G	957	A	958	*	U	986	A	987	U	988	cWW	cWW	cWW
198	IL_9H3G_048	9H3G	0.3142	0	Isolated non-canonical cWW pair	A	LSU rRNA	A	1020	G	1021	A	1022	*	U	1049	A	1050	U	1051	cWW	cWW	cWW
199	IL_8GLP_234	8GLP	0.2963	0	Isolated non-canonical cWW pair	S2	SSU rRNA	C	877	G	878	C	879	*	G	907	A	908	G	909	cWW	cWW	cWW
200	IL_9AXU_064	9AXU	0.2901	0	Isolated non-canonical cWW pair	2	LSU rRNA	G	1696	G	1697	C	1698	*	G	1827	A	1828	C	1829	cWW	cWW	cWW
201	IL_8OI5_070	8OI5	0.2786	0	Isolated non-canonical cWW pair	1	LSU rRNA	G	1657	G	1658	C	1659	*	G	1782	A	1783	C	1784	cWW	cWW	cWW
202	IL_4LFB_006	4LFB	0.3590	0	Isolated non-canonical cWW pair	A	SSU rRNA	C	99	A	101	G	102	*	C	67	G	68	G	69	cWW	cWW	cWW
203	IL_8B0X_060	8B0X	0.3226	0	Isolated non-canonical cWW pair	A	SSU rRNA	G	1486	G	1487	G	1488	*	C	1412	A	1413	U	1414	cWW	cWW	cWW
204	IL_4LFB_059	4LFB	0.3660	0	Isolated non-canonical cWW pair	A	SSU rRNA	G	1486	G	1487	G	1488	*	C	1412	A	1413	U	1414	cWW	cWW	cWW
205	IL_8QYX_171	8QYX	0.3212	1	Isolated non-canonical cWW pair	B2	5S rRNA	G	82	A	83	G	85	*	C	92	G	93	C	94	cWW	cWW	cWW
206	IL_8OI5_140	8OI5	0.3293	1	Isolated non-canonical cWW pair	3	5S rRNA	C	94	A	95	U	96	*	A	84	G	85	G	87	cWW	cWW	cWW
207	IL_9SUM_134	9SUM	0.3187	1	Isolated non-canonical cWW pair (H)	B	5S rRNA	C	95	A	96	U	97	*	A	85	G	86	G	88	cWW	cWW	cWW
208	IL_9PN5_139	9PN5	0.3257	1	Isolated non-canonical cWW pair	A3	5S rRNA	A	84	G	85	G	87	*	C	94	A	95	U	96	cWW	cWW	cWW
209	IL_9AXU_130	9AXU	0.3046	1	Isolated non-canonical cWW pair	3	5S rRNA	A	92	A	93	C	94	*	G	82	G	83	U	85	cWW	cWW	cWW
210	IL_5MSF_001	5MSF	0.2715	1	Isolated non-canonical cWW pair	R	RNA (18-mer)	C	13\|\|\|\|P_1	A	14\|\|\|\|P_1	C	15\|\|\|\|P_1	*	G	3\|\|\|\|P_1	G	4\|\|\|\|P_1	G	6\|\|\|\|P_1	cWW	cWW	cWW
211	IL_9PN5_117	9PN5	0.2305	0	Isolated non-canonical cWW pair	A1	LSU rRNA	C	3164	A	3165	C	3166	*	G	3284	C	3285	G	3286	cWW	ncWW	cWW
212	IL_2R8S_001	2R8S	0.2837	0	Isolated non-canonical cWW pair	R	P4-P6 RNA RIBOZYME DOMAIN	C	208	A	210	C	211	*	G	110	G	111	G	112	cWW	cWW	cWW
213	IL_9PN5_067	9PN5	0.2991	0	Isolated non-canonical cWW pair	A1	LSU rRNA	G	1661	G	1662	C	1663	*	G	1786	A	1787	C	1788	cWW	cWW	cWW
214	IL_9SUM_063	9SUM	0.2748	0	Isolated non-canonical cWW pair (H)	A	LSU rRNA	G	1601	G	1602	C	1603	*	G	1729	A	1730	C	1731	cWW	cWW	cWW
215	IL_5DO5_003	5DO5	0.3005	0	Isolated non-canonical cWW pair	A	RNA (12-mer)	C	103	G	104	A	105	*	U	108\|\|A\|\|2_556	AF2	109\|\|A\|\|2_556	2SG	110\|\|\|\|2_556	cWW	cWW	cWW
216	IL_8PFQ_003	8PFQ	0.2937	0	Isolated non-canonical cWW pair	A+B	Chains: A,B	U	8	A	9	G	10	*	C	23	G	24	A	25	cWW	cWW	cWW
217	IL_4RBZ_002	4RBZ	0.3195	0	Isolated non-canonical cWW pair	A	RNA (12-mer)	C	103	G	104	A2M	105	*	U	108\|\|A\|\|2_656	A	109\|\|A\|\|2_656	G	110\|\|\|\|2_656	cWW	cWW	cWW
218	IL_4RBY_001	4RBY	0.3301	0	Isolated non-canonical cWW pair	A	RNA (12-mer)	C	103	2SG	104	A	105	*	U	108\|\|\|\|2_556	A	109\|\|\|\|2_556	G	110\|\|\|\|2_556	cWW	cWW	cWW
219	IL_3IVK_002	3IVK	0.3476	0	Isolated non-canonical cWW pair	M	class I ligase product	A	102	A	103	C	104	*	G	87	G	88	U	89	cWW	cWW	cWW	ncWW
220	IL_3HHN_004	3HHN	0.3052	0	Isolated non-canonical cWW pair	E	Class I ligase ribozyme, self-ligation product	G	87	G	88	U	89	*	A	102	A	103	C	104	cWW	cWW	cWW
221	IL_9PN5_229	9PN5	0.2849	0	Isolated non-canonical cWW pair	B5	SSU rRNA	G	1672	G	1673	C	1674	*	G	1727	A	1728	C	1729	cWW	cWW	cWW
222	IL_4RC0_003	4RC0	0.3222	0	Isolated non-canonical cWW pair	A	RNA (12-mer)	C	103	G	104\|\|A	A	105\|\|A	*	U	108\|\|A\|\|2_556	A2M	109\|\|A\|\|2_556	2SG	110\|\|\|\|2_556	cWW	cWW	cWW
223	IL_8GLP_173	8GLP	0.3090	0	Isolated non-canonical cWW pair	L5	LSU rRNA	G	4992	G	4993	G	4994	*	C	5057	A	5058	C	5059	cWW	cWW	cWW
224	IL_5UNE_007	5UNE	0.3067	0	Isolated non-canonical cWW pair	B+A	RNA (47-MER)	G	12	G	13	C	14	*	G	31	G	32	C	33	ncWW		cWW
225	IL_5UNE_003	5UNE	0.2854	0	Isolated non-canonical cWW pair	B+A	RNA (47-MER)	G	31	G	32	C	33	*	G	12	G	13	C	14	cWW		cWW
226	IL_8K85_006	8K85	0.3335	0	Isolated non-canonical cWW pair	A+B	RNA (56-MER)	A	23	A	24	C	25	*	G	26	A	27	U	28	cWW	cwW	cWW
227	IL_3DIL_006	3DIL	0.3019	0	Isolated non-canonical cWW pair	A	Lysine riboswitch	C	137	A	138	C	139	*	G	115	G	116	G	117	cWW	cWW	cWW
228	IL_3D0U_006	3D0U	0.2866	0	Isolated non-canonical cWW pair	A	Lysine riboswitch	C	134	A	135	C	136	*	G	112	G	113	G	114	cWW	cWW	cWW
229	IL_8PFQ_001	8PFQ	0.2906	0	Isolated non-canonical cWW pair	B+A	Chains: A,B	U	28	A	29	G	30	*	C	3	G	4	A	5	cWW	cWW	cWW
230	IL_8K85_007	8K85	0.2783	0	Isolated non-canonical cWW pair	B+A	RNA (56-MER)	A	23	A	24	C	25	*	G	26	A	27	U	28	cWW	cwW	cWW
231	IL_9H3G_078	9H3G	0.3032	0	Isolated non-canonical cWW pair	A	LSU rRNA	U	1691	G	1692	U	1693	*	G	1675	A	1676	A	1677	cWW	cWW	cWW
232	IL_7QUA_003	7QUA	0.3452	0	Isolated non-canonical cWW pair	A	RNA (12-mer)	U	1008\|\|\|\|2_656	A	1009\|\|\|\|2_656	G	1010\|\|\|\|2_656	*	C	1003	G	1004	XMP	1005	cWWa	cWW	cWW
233	IL_9PN5_123	9PN5	0.3158	0	Isolated non-canonical cWW pair	A1	LSU rRNA	C	3233	A	3234	C	3235	*	G	3252	G	3253	G	3254	cWW	cWW	cWW
234	IL_9SUM_179	9SUM	0.3605	0		CA	SSU rRNA	G	924	A	925	C	926	*	G	841	G	842	U	843	ncWW	cWW	cWW
235	IL_8D29_001	8D29	0.3130	0	Isolated non-canonical cWW pair	C	RNA (34-MER)	A	29	G	30	C	31	*	G	4	A	5	U	6	ncWW	cWW	cWW
236	IL_4M4O_002	4M4O	0.2637	0	Isolated non-canonical cWW pair	B	RNA (59-MER)	G	12	G	13	C	14	*	G	46	A	47	C	48	cWW	cWW	cWW
237	IL_9M86_005	9M86	0.3057	0	Isolated non-canonical cWW pair	D	RNA (31-MER)	G	52	G	53	C	54	*	G	69	A	70	C	71	cWW	cWW	cWW
238	IL_4M6D_011	4M6D	0.3221	0	Isolated non-canonical cWW pair	H	aptamer	G	12	G	13	C	14	*	G	46	A	47	C	48	cWW	cWW	ncWW
239	IL_3CUL_008	3CUL	0.3341	0	Isolated non-canonical cWW pair	C	RNA (92-MER)	U	57	G	58	G	59	*	C	87	A	88	G	89	ncWWa	ncWW	cWW
240	IL_1MFQ_003	1MFQ	0.4101	0	Isolated non-canonical cWW pair	A	SRP RNA	A	163	G	164	G	165	*	U	132	A	133	U	134	cWW	ncWW	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
CUG*CUG	24
GUC*GUC	13
CCG*CUG	12
GCU*AAC	10
GGC*GAC	8
ACC*GAU	7
CCC*GAG	6
CCG*CCG	5
GCC*GCC	5
GCG*CAU	5
ACU*AUU	4
GCC*GAC	4
CCU*ACG	4
AGA*UAU	4
CAC*GGG	4
CAC*GCG	3
CCU*GCG	3
GCC*GUC	3
GUC*GCU	3
CUU*GUG	3
CCG*CAG	3
GCG*CAC	3
ACU*ACU	3
GAA*UAC	3
GUUU*GAC	2
GUC*GCC	2
CC(OMG)*CUG	2
UCU*AUA	2
AUA*UCU	2
GUC*GU(5MC)	2
ACU*AAU	2
GUU*GUC	2
GAG*UCC	2
CAA*UCG	2
GAC*GGU	2
CAG*CAG	2
GGU*AAC	2
UGG*CGA	2
GGG*CAU	2
CAU*AGUG	2
UAG*CGA	2
GGC*GGC	2
AAC*GAU	2
GGA*UAC	1
GAAG*CAC	1
G(PSU)UU*GAC	1
GGCCG*UAC	1
CGAC*GAG	1
CAC*GAGG	1
GAG*CUAC	1
GAG*CUGC	1
CUC*GUG	1
GAC*GCC	1
AAA*(PSU)C(PSU)	1
CAU*ACG	1
CC(PSU)*GCG	1
GA(PSU)*GC(PSU)	1
ACG*CUU	1
CCC*GUG	1
CC(OMU)*AUG	1
ACU*AU(PSU)	1
UCG*CUA	1
ACG*CAU	1
CCA*UAG	1
CAG*CCG	1
CCU*AAG	1
GUU*ACC	1
GCU*AUC	1
GCU*A(A2M)C	1
GCU*AC	1
GUG*CUU	1
CCC*GCG	1
UUA*UUA	1
UCA*UCA	1
TCT*ACA	1
A(A5M)U*AAU	1
GUU*G(PSU)(OMC)	1
CCA*UUG	1
UCU*GAG	1
C(PYY)G*C(PYY)G	1
UAU*ACG	1
GAG*CGU	1
UAC*GAA	1
GAC*GAC	1
CAC*GAG	1
GA(A2M)*UAC	1
CGC*GAG	1
CAG*CGG	1
GAUG*CGC	1
AGUG*CAU	1
AAC*GGUU	1
CAC*GGAG	1
CGA*U(AF2)(2SG)	1
CG(A2M)*UAG	1
CA*UAG	1
AAC*GGU	1
CGA*U(A2M)(2SG)	1
GGG*CAC	1
UGU*GAA	1
UAG*CG(XMP)	1
AGC*GAU	1
UGG*CAG	1
AGG*UAU	1

Non-Watson-Crick part of the motif

Sequence	Counts
U*U	47
C*A	44
C*U	30
G*A	24
C*C	24
A*C	13
A*G	12
A*A	11
U*C	8
G*G	4
A*GU	3
UU*A	2
C*(A2M)	2
AA*A	1
(PSU)U*A	1
GCC*A	1
GA*A	1
A*AG	1
A*UA	1
A*UG	1
(A5M)*A	1
U*(PSU)	1
(PYY)*(PYY)	1
AU*G	1
GU*A	1
A*GA	1
G*(AF2)	1
(2SG)*A	1
G*(A2M)	1

Release history

Release	4.14
Date	2026-09-09
Status	Updated, 2 parents

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: Isolated non-canonical cWW pair (218)
Isolated non-canonical cWW pair (H) (15)
(6)
Isolated cWH basepair (H) (1)
Basepair signature: cWW-cWW-cWW
Heat map statistics: Min 0.02 | Avg 0.30 | Max 0.65

Help

Coloring options: Nucleotide numbers

Motif IL_01003.7 Version IL_01003.7 of this group appears in releases 4.14 to 4.14 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif IL_01003.7 Version IL_01003.7 of this group appears in releases 4.14 to 4.14

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