IL_11AA_004
3D structure
- PDB id
- 11AA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast co-transcriptional pre-60S assembly intermediate Nop12 RNP
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.78 Å
Loop
- Sequence
- CUUAGUAA*UGAAGCG
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_11AA_004 not in the Motif Atlas
- Homologous match to IL_9AXU_005
- Geometric discrepancy: 0.1403
- The information below is about IL_9AXU_005
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_62879.2
- Basepair signature
- cWW-L-R-tSW-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
11AA|1|1|C|82
11AA|1|1|U|83
11AA|1|1|U|84
11AA|1|1|A|85
11AA|1|1|G|86
11AA|1|1|U|87
11AA|1|1|A|88
11AA|1|1|A|89
*
11AA|1|1|U|97
11AA|1|1|G|98
11AA|1|1|A|99
11AA|1|1|A|100
11AA|1|1|G|101
11AA|1|1|C|102
11AA|1|1|G|103
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain L
- 60S ribosomal protein L13-A
- Chain N
- 60S ribosomal protein L15-A
- Chain b
- Ribosome biogenesis protein BRX1
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