Motif IL_62879.2 Version IL_62879.2 of this group appears in releases 4.14 to 4.14
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | break | 9 | 10 | 11 | 12 | 13 | 14 | 15 | 1-15 | 2-14 | 3-13 | 4-12 | 5-6 | 6-11 | 7-10 | 8-9 | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_8OI5_006 | 8OI5 | 0.0712 | 0 | 8x7 Sarcin-Ricin; G-bulge | 1 | LSU rRNA | C | 81 | U | 82 | C | 83 | A | 84 | G | 85 | U | 86 | A | 87 | G | 88 | * | U | 96 | G | 97 | A | 98 | A | 99 | G | 100 | C | 101 | G | 102 | cWW | tSW | tHH | cSH | tWH | tHS | cWW | |
| 2 | IL_9SUM_005 | 9SUM | 0.0465 | 0 | 8x7 Sarcin-Ricin; G-bulge (H) | A | LSU rRNA | C | 80 | U | 81 | C | 82 | A | 83 | G | 84 | U | 85 | A | 86 | A | 87 | * | U | 95 | G | 96 | A | 97 | A | 98 | G | 99 | C | 100 | G | 101 | cWW | tSW | tHH | cSH | tWH | tHS | cWW | |
| 3 | IL_9PN5_005 | 9PN5 | 0.0571 | 0 | 8x7 Sarcin-Ricin; G-bulge | A1 | LSU rRNA | C | 82 | U | 83 | U | 84 | A | 85 | G | 86 | U | 87 | A | 88 | A | 89 | * | U | 97 | G | 98 | A | 99 | A | 100 | G | 101 | C | 102 | G | 103 | cWW | tSW | tHH | cSH | tWH | tHS | cWW | |
| 4 | IL_9AXU_005 | 9AXU | 0.0000 | 0 | 8x7 Sarcin-Ricin; G-bulge | 2 | LSU rRNA | C | 82 | U | 83 | C | 84 | A | 85 | G | 86 | U | 87 | A | 88 | A | 89 | * | U | 97 | G | 98 | A | 99 | A | 100 | G | 101 | C | 102 | G | 103 | cWW | tSW | tHH | cSH | tWH | tHS | cWW | |
| 5 | IL_9PN5_112 | 9PN5 | 0.2019 | 0 | Sarcin-Ricin target in LSU H95; G-bulge | A1 | LSU rRNA | C | 3018 | U | 3019 | U | 3020 | A | 3021 | G | 3022 | U | 3023 | A | 3024 | C | 3025 | * | G | 3030 | G | 3031 | A | 3032 | A | 3033 | C | 3034 | A | 3035 | G | 3036 | cWW | tSW | tHH | cSH | tWH | tHS | cWW | |
| 6 | IL_8QYX_169 | 8QYX | 0.2198 | 0 | 8x7 Sarcin-Ricin; G-bulge | B2 | 5S rRNA | G | 71 | U | 72 | U | 73 | A | 74 | G | 75 | U | 76 | A | 77 | C | 78 | * | G | 98 | G | 99 | A | 100 | A | 101 | U | 102 | A | 103 | C | 104 | cWW | ntSH | tHH | cSH | tWH | tHS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUCAGUAA*UGAAGCG | 2 |
| CUCAGUAG*UGAAGCG | 1 |
| CUUAGUAA*UGAAGCG | 1 |
| CUUAGUAC*GGAACAG | 1 |
| GUUAGUAC*GGAAUAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UCAGUA*GAAGC | 3 |
| UUAGUA*GAAGC | 1 |
| UUAGUA*GAACA | 1 |
| UUAGUA*GAAUA | 1 |
Release history
| Release | 4.14 |
|---|---|
| Date | 2026-09-09 |
| Status | Updated, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- 8x7 Sarcin-Ricin; G-bulge (4)
- Sarcin-Ricin target in LSU H95; G-bulge (1)
- 8x7 Sarcin-Ricin; G-bulge (H) (1)
- Basepair signature
- cWW-L-R-tSW-tHH-cSH-tWH-tHS-cWW
- Heat map statistics
- Min 0.05 | Avg 0.13 | Max 0.25
Coloring options: