IL_11AA_008
3D structure
- PDB id
- 11AA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast co-transcriptional pre-60S assembly intermediate Nop12 RNP
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.78 Å
Loop
- Sequence
- CUG*CCG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_11AA_008 not in the Motif Atlas
- Homologous match to IL_9PN5_007
- Geometric discrepancy: 0.07
- The information below is about IL_9PN5_007
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_01003.7
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 240
Unit IDs
11AA|1|1|C|125
11AA|1|1|U|126
11AA|1|1|G|127
*
11AA|1|1|C|141
11AA|1|1|C|142
11AA|1|1|G|143
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain 2
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain G
- 60S ribosomal protein L8-A
- Chain N
- 60S ribosomal protein L15-A
- Chain n
- Pescadillo homolog
- Chain s
- Ribosome biogenesis protein ERB1
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