IL_11BQ_019

3D structure

PDB id

11BQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli 70S ribosome containing an evolved 16S rRNA (EC-S3.5)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UGACGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

11BQ|1|A|C|412

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11BQ_019 not in the Motif Atlas

Homologous match to IL_6CZR_359

Geometric discrepancy: 0.5934

The information below is about IL_6CZR_359

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.2

Basepair signature

cWW-tSH-tWH-cWH-tSS-tHW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

11BQ|1|A|U|409
11BQ|1|A|G|410
11BQ|1|A|A|411
11BQ|1|A|C|412
11BQ|1|A|G|413
11BQ|1|A|A|414
11BQ|1|A|A|415
11BQ|1|A|G|416
*
11BQ|1|A|U|427
11BQ|1|A|G|428
11BQ|1|A|U|429
11BQ|1|A|A|430
11BQ|1|A|A|431
11BQ|1|A|A|432
11BQ|1|A|G|433

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain D

Small ribosomal subunit protein uS4