IL_11BQ_022

3D structure

PDB id

11BQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli 70S ribosome containing an evolved 16S rRNA (EC-S3.5)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GAAGGG*CAUUGAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11BQ_022 not in the Motif Atlas

Homologous match to IL_6CZR_406

Geometric discrepancy: 0.5367

The information below is about IL_6CZR_406

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_26564.1

Basepair signature

cWW-L-R-tWH-L-R-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

11BQ|1|A|G|450
11BQ|1|A|A|451
11BQ|1|A|A|452
11BQ|1|A|G|453
11BQ|1|A|G|454
11BQ|1|A|G|455
*
11BQ|1|A|C|477
11BQ|1|A|A|478
11BQ|1|A|U|479
11BQ|1|A|U|480
11BQ|1|A|G|481
11BQ|1|A|A|482
11BQ|1|A|C|483

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain P

Small ribosomal subunit protein bS16