Motif IL_26564.1 Version IL_26564.1 of this group appears in releases 3.88 to 3.90
#S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | break | 8 | 9 | 10 | 11 | 12 | 13 | 1-13 | 2-12 | 3-11 | 4-10 | 5-6 | 7-8 | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_6CZR_406 | 6CZR | 0.0000 | 0 | 1a | SSU rRNA | G | 462 | A | 463 | C | 464 | U | 465 | G | 466 | A | 467 | C | 468 | * | G | 445 | A | 446 | A | 447 | A | 448 | C | 449 | C | 450 | ncWW | ncWB | ntWH | ncSH | cWW | |
2 | IL_4LFB_019 | 4LFB | 0.1683 | 0 | A | SSU rRNA | G | 477 | A | 478 | C | 479 | U | 480 | G | 481 | A | 482 | C | 483 | * | G | 450 | A | 451 | A | 452 | A | 453 | C | 454 | C | 455 | cWW | cWB | tWH | tWH | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
GACUGAC*GAAACC | 2 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
ACUGA*AAAC | 2 |
- Annotations
-
- (2)
- Basepair signature
- cWW-L-R-tWH-L-R-L-R-L-cWW
- Heat map statistics
- Min 0.17 | Avg 0.08 | Max 0.17
Coloring options: