IL_11BQ_052

3D structure

PDB id

11BQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli 70S ribosome containing an evolved 16S rRNA (EC-S3.5)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CUGC*GAGGAAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11BQ_052 not in the Motif Atlas

Geometric match to IL_8B0X_052

Geometric discrepancy: 0.1243

The information below is about IL_8B0X_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_32376.2

Basepair signature

cWW-cSH-cWW-tWH-L-cWW-L-L

Number of instances in this motif group

3

Unit IDs

11BQ|1|A|C|1158
11BQ|1|A|U|1159
11BQ|1|A|G|1160
11BQ|1|A|C|1161
*
11BQ|1|A|G|1175
11BQ|1|A|A|1176
11BQ|1|A|G|1177
11BQ|1|A|G|1178
11BQ|1|A|A|1179
11BQ|1|A|A|1180
11BQ|1|A|G|1181

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain B

Small ribosomal subunit protein uS2

Chain I

Small ribosomal subunit protein uS9