IL_11BQ_099

3D structure

PDB id

11BQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli 70S ribosome containing an evolved 16S rRNA (EC-S3.5)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UCCCAAAG*CA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11BQ_099 not in the Motif Atlas

Homologous match to IL_7A0S_034

Geometric discrepancy: 0.1652

The information below is about IL_7A0S_034

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_46868.1

Basepair signature

cWW-L-cWW-L-L-R-L-R

Number of instances in this motif group

5

Unit IDs

11BQ|1|a|U|1004
11BQ|1|a|C|1005
11BQ|1|a|C|1006
11BQ|1|a|C|1007
11BQ|1|a|A|1008
11BQ|1|a|A|1009
11BQ|1|a|A|1010
11BQ|1|a|G|1011
*
11BQ|1|a|C|1150
11BQ|1|a|A|1151

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain i

Large ribosomal subunit protein uL13

Chain p

50S ribosomal protein L20