IL_11BQ_108

3D structure

PDB id

11BQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli 70S ribosome containing an evolved 16S rRNA (EC-S3.5)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CUGCGAAG*UGGAG

Length

13 nucleotides

Bulged bases

11BQ|1|a|C|1211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11BQ_108 not in the Motif Atlas

Homologous match to IL_7A0S_043

Geometric discrepancy: 0.1663

The information below is about IL_7A0S_043

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_90775.2

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

30

Unit IDs

11BQ|1|a|C|1208
11BQ|1|a|U|1209
11BQ|1|a|G|1210
11BQ|1|a|C|1211
11BQ|1|a|G|1212
11BQ|1|a|A|1213
11BQ|1|a|A|1214
11BQ|1|a|G|1215
*
11BQ|1|a|U|1234
11BQ|1|a|G|1235
11BQ|1|a|G|1236
11BQ|1|a|A|1237
11BQ|1|a|G|1238

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain p

50S ribosomal protein L20