IL_11BQ_113

3D structure

PDB id

11BQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli 70S ribosome containing an evolved 16S rRNA (EC-S3.5)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGAGG*CGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11BQ_113 not in the Motif Atlas

Homologous match to IL_7A0S_049

Geometric discrepancy: 0.2468

The information below is about IL_7A0S_049

Detailed Annotation

tSH-tWH-tHS

Broad Annotation

No text annotation

Motif group

IL_05821.2

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

19

Unit IDs

11BQ|1|a|C|1357
11BQ|1|a|G|1358
11BQ|1|a|A|1359
11BQ|1|a|G|1360
11BQ|1|a|G|1361
*
11BQ|1|a|C|1370
11BQ|1|a|G|1371
11BQ|1|a|U|1372
11BQ|1|a|A|1373
11BQ|1|a|G|1374

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain 1

Large ribosomal subunit protein bL34

Chain c

50S ribosomal protein L2

Chain w

50S ribosomal protein L28