IL_11BQ_155

3D structure

PDB id

11BQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli 70S ribosome containing an evolved 16S rRNA (EC-S3.5)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AUA*UGUUU

Length

8 nucleotides

Bulged bases

11BQ|1|a|U|2491

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11BQ_155 not in the Motif Atlas

Homologous match to IL_7A0S_086

Geometric discrepancy: 0.1912

The information below is about IL_7A0S_086

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform with extra cWW

Motif group

IL_36931.3

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

26

Unit IDs

11BQ|1|a|A|2459
11BQ|1|a|U|2460
11BQ|1|a|A|2461
*
11BQ|1|a|U|2489
11BQ|1|a|G|2490
11BQ|1|a|U|2491
11BQ|1|a|U|2492
11BQ|1|a|U|2493

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain l

Large ribosomal subunit protein uL16