IL_11DG_015

3D structure

PDB id

11DG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chimeric Escherichia coli 70S ribosome containing an evolved Vibrio cholerae 16S rRNA (VC-S4.4)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CAG*CAGAAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11DG_015 not in the Motif Atlas

Geometric match to IL_8B0X_020

Geometric discrepancy: 0.1593

The information below is about IL_8B0X_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_02111.1

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

2

Unit IDs

11DG|1|A|C|440
11DG|1|A|A|441
11DG|1|A|G|442
*
11DG|1|A|C|492
11DG|1|A|A|493
11DG|1|A|G|494
11DG|1|A|A|495
11DG|1|A|A|496
11DG|1|A|G|497

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain D

Small ribosomal subunit protein uS4