IL_11DG_031

3D structure

PDB id

11DG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chimeric Escherichia coli 70S ribosome containing an evolved Vibrio cholerae 16S rRNA (VC-S4.4)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGAGUACG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11DG_031 not in the Motif Atlas

Homologous match to IL_6CZR_364

Geometric discrepancy: 0.1378

The information below is about IL_6CZR_364

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.3

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

5

Unit IDs

11DG|1|A|G|887
11DG|1|A|G|888
11DG|1|A|A|889
11DG|1|A|G|890
11DG|1|A|U|891
11DG|1|A|A|892
11DG|1|A|C|893
11DG|1|A|G|894
*
11DG|1|A|U|905
11DG|1|A|G|906
11DG|1|A|A|907
11DG|1|A|A|908
11DG|1|A|A|909
11DG|1|A|C|910

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain L

30S ribosomal protein S12