IL_11DG_050

3D structure

PDB id

11DG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chimeric Escherichia coli 70S ribosome containing an evolved Vibrio cholerae 16S rRNA (VC-S4.4)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGAA*UGAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11DG_050 not in the Motif Atlas

Homologous match to IL_6CZR_169

Geometric discrepancy: 0.1527

The information below is about IL_6CZR_169

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.14

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

36

Unit IDs

11DG|1|A|G|1417
11DG|1|A|G|1418
11DG|1|A|A|1419
11DG|1|A|A|1420
*
11DG|1|A|U|1482
11DG|1|A|G|1483
11DG|1|A|A|1484
11DG|1|A|C|1485

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain a

Large subunit ribosomal RNA; LSU rRNA