IL_11DG_052

3D structure

PDB id

11DG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chimeric Escherichia coli 70S ribosome containing an evolved Vibrio cholerae 16S rRNA (VC-S4.4)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GUAG*CCGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11DG_052 not in the Motif Atlas

Geometric match to IL_8GLP_220

Geometric discrepancy: 0.3415

The information below is about IL_8GLP_220

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_71194.3

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

41

Unit IDs

11DG|1|A|G|1440
11DG|1|A|U|1441
11DG|1|A|A|1442
11DG|1|A|G|1443
*
11DG|1|A|C|1460
11DG|1|A|C|1461
11DG|1|A|G|1462
11DG|1|A|C|1463

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain T

Small ribosomal subunit protein bS20

Chain o

Large ribosomal subunit protein bL19