IL_11DG_096

3D structure

PDB id

11DG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chimeric Escherichia coli 70S ribosome containing an evolved Vibrio cholerae 16S rRNA (VC-S4.4)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CUGCGAAG*UGGAG

Length

13 nucleotides

Bulged bases

11DG|1|a|C|1211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11DG_096 not in the Motif Atlas

Homologous match to IL_7A0S_043

Geometric discrepancy: 0.194

The information below is about IL_7A0S_043

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_90775.2

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

30

Unit IDs

11DG|1|a|C|1208
11DG|1|a|U|1209
11DG|1|a|G|1210
11DG|1|a|C|1211
11DG|1|a|G|1212
11DG|1|a|A|1213
11DG|1|a|A|1214
11DG|1|a|G|1215
*
11DG|1|a|U|1234
11DG|1|a|G|1235
11DG|1|a|G|1236
11DG|1|a|A|1237
11DG|1|a|G|1238

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain p

50S ribosomal protein L20