IL_11DG_097

3D structure

PDB id

11DG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chimeric Escherichia coli 70S ribosome containing an evolved Vibrio cholerae 16S rRNA (VC-S4.4)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AUAAGUAA*UGAAAUU

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11DG_097 not in the Motif Atlas

Homologous match to IL_7A0S_045

Geometric discrepancy: 0.1374

The information below is about IL_7A0S_045

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_62167.4

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

16

Unit IDs

11DG|1|a|A|1262
11DG|1|a|U|1263
11DG|1|a|A|1264
11DG|1|a|A|1265
11DG|1|a|G|1266
11DG|1|a|U|1267
11DG|1|a|A|1268
11DG|1|a|A|1269
*
11DG|1|a|U|2011
11DG|1|a|G|2012
11DG|1|a|A|2013
11DG|1|a|A|2014
11DG|1|a|A|2015
11DG|1|a|U|2016
11DG|1|a|U|2017

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain e

Large ribosomal subunit protein uL4

Chain r

Large ribosomal subunit protein uL22

Chain z

50S ribosomal protein L32