IL_11DG_118

3D structure

PDB id

11DG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chimeric Escherichia coli 70S ribosome containing an evolved Vibrio cholerae 16S rRNA (VC-S4.4)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UAUGUAG*UGAAA

Length

12 nucleotides

Bulged bases

11DG|1|a|U|1714

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11DG_118 not in the Motif Atlas

Geometric match to IL_8B0X_128

Geometric discrepancy: 0.0797

The information below is about IL_8B0X_128

Detailed Annotation

6x5 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_82100.1

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

11DG|1|a|U|1712
11DG|1|a|A|1713
11DG|1|a|U|1714
11DG|1|a|G|1715
11DG|1|a|U|1716
11DG|1|a|A|1717
11DG|1|a|G|1718
*
11DG|1|a|U|1742
11DG|1|a|G|1743
11DG|1|a|A|1744
11DG|1|a|A|1745
11DG|1|a|A|1746

Current chains

Chain a

23S ribosomal RNA

Nearby chains