IL_11DG_122

3D structure

PDB id

11DG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chimeric Escherichia coli 70S ribosome containing an evolved Vibrio cholerae 16S rRNA (VC-S4.4)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

11DG|1|a|A|1801, 11DG|1|a|C|1816, 11DG|1|a|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11DG_122 not in the Motif Atlas

Homologous match to IL_7A0S_065

Geometric discrepancy: 0.1121

The information below is about IL_7A0S_065

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.6

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

11DG|1|a|U|1798
11DG|1|a|G|1799
11DG|1|a|C|1800
11DG|1|a|A|1801
11DG|1|a|A|1802
11DG|1|a|A|1803
11DG|1|a|C|1804
*
11DG|1|a|G|1813
11DG|1|a|G|1814
11DG|1|a|A|1815
11DG|1|a|C|1816
11DG|1|a|G|1817
11DG|1|a|U|1818
11DG|1|a|A|1819
11DG|1|a|U|1820
11DG|1|a|A|1821

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain A

Small subunit ribosomal RNA; SSU rRNA

Chain c

50S ribosomal protein L2