IL_11DG_148
3D structure
- PDB id
- 11DG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Chimeric Escherichia coli 70S ribosome containing an evolved Vibrio cholerae 16S rRNA (VC-S4.4)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CUGAG*CGAGAUGAG
- Length
- 14 nucleotides
- Bulged bases
- 11DG|1|a|G|2777, 11DG|1|a|G|2780
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_11DG_148 not in the Motif Atlas
- Homologous match to IL_7A0S_093
- Geometric discrepancy: 0.2268
- The information below is about IL_7A0S_093
- Detailed Annotation
- tSH-tHS-tHW
- Broad Annotation
- tSH-tHS-tHW
- Motif group
- IL_04638.4
- Basepair signature
- cWW-tSH-tHW-tHS-L-cWW-L-L
- Number of instances in this motif group
- 6
Unit IDs
11DG|1|a|C|2636
11DG|1|a|U|2637
11DG|1|a|G|2638
11DG|1|a|A|2639
11DG|1|a|G|2640
*
11DG|1|a|C|2774
11DG|1|a|G|2775
11DG|1|a|A|2776
11DG|1|a|G|2777
11DG|1|a|A|2778
11DG|1|a|U|2779
11DG|1|a|G|2780
11DG|1|a|A|2781
11DG|1|a|G|2782
Current chains
- Chain a
- 23S ribosomal RNA
Nearby chains
- Chain d
- 50S ribosomal protein L3
- Chain i
- Large ribosomal subunit protein uL13
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