IL_11DG_149

3D structure

PDB id

11DG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chimeric Escherichia coli 70S ribosome containing an evolved Vibrio cholerae 16S rRNA (VC-S4.4)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11DG_149 not in the Motif Atlas

Homologous match to IL_7A0S_094

Geometric discrepancy: 0.1213

The information below is about IL_7A0S_094

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.6

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

6

Unit IDs

11DG|1|a|C|2652
11DG|1|a|U|2653
11DG|1|a|A|2654
11DG|1|a|G|2655
11DG|1|a|U|2656
11DG|1|a|A|2657
11DG|1|a|C|2658
*
11DG|1|a|G|2663
11DG|1|a|G|2664
11DG|1|a|A|2665
11DG|1|a|C|2666
11DG|1|a|C|2667
11DG|1|a|G|2668

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain g

Large ribosomal subunit protein uL6