IL_11EL_045

3D structure

PDB id

11EL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chimeric Escherichia coli 70S ribosome containing an evolved 16S rRNA from Vibrio cholerae (VC-ST)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AGAG*CUCU

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11EL_045 not in the Motif Atlas

Geometric match to IL_8BH9_001

Geometric discrepancy: 0.317

The information below is about IL_8BH9_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65740.2

Basepair signature

cWW-L-R-L-R-cWW

Number of instances in this motif group

4

Unit IDs

11EL|1|A|A|1000
11EL|1|A|G|1001
11EL|1|A|A|1002
11EL|1|A|G|1003
*
11EL|1|A|C|1037
11EL|1|A|U|1038
11EL|1|A|C|1039
11EL|1|A|U|1040

Current chains

Chain A

16S ribosomal RNA

Nearby chains