Motif IL_39691.1 Version IL_39691.1 of this group appears in releases 4.10 to 4.10
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 8 | 1-8 | 2-7 | 3-6 | 4-5 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_3NPQ_006 | 3NPQ | 0.7983 | 2 | A | SAH (S-adenosyl-L-homocysteine) riboswitch aptamer | C | 16 | A | 17 | A | 18 | G | 19 | * | C | 26 | C | 27 | C | 28 | G | 31 | cWW | tHS | ncWW | cWW | |
| 2 | IL_9I0V_001 | 9I0V | 0.3802 | 0 | C | A SELEX-derived artificial RNA aptamer | C | 24 | U | 25 | A | 26 | G | 27 | * | C | 6 | C | 7 | C | 8 | G | 9 | cWW | ncWW | cWW | ||
| 3 | IL_9PN5_218 | 9PN5 | 0.4342 | 0 | B5 | SSU rRNA | C | 1495 | U | 1496 | U | 1497 | G | 1498 | * | C | 1509 | U | 1510 | U | 1511 | G | 1512 | cWW | cwW | cWW | ||
| 4 | IL_4WF9_110 | 4WF9 | 0.3589 | 0 | Tandem non-canonical cWW pairs | Y | 5S rRNA | U | 107 | G | 108 | C | 109 | C | 110 | * | G | 5 | U | 6 | G | 7 | A | 8 | cWW | ncWW | cWW | |
| 5 | IL_7VYX_002 | 7VYX | 0.2450 | 0 | Tandem non-canonical cWW pairs | C | sgRNA | C | 13 | U | 14 | U | 15 | C | 16 | * | G | 50 | G | 51 | U | 52 | G | 53 | ncWW | ncWw | ncWWa | cWW |
| 6 | IL_8BH9_001 | 8BH9 | 0.1876 | 0 | B | RNA (12-mer) | A | 430 | A | 431 | U | 432 | G | 433 | * | C | 500 | A | 501 | U | 502 | U | 503 | cWW | cWH | cWW | ||
| 7 | IL_4X4T_003 | 4X4T | 0.1903 | 0 | G | G70A tRNA minihelix ending in CCACCA | G | 28||A | A | 29||A | 5BU | 30||A | C | 31||A | * | G | 1||A | G | 2||A | C | 3||A | C | 4||A | cWW | ncWW | ncWWa | cWW | |
| 8 | IL_9PN5_200 | 9PN5 | 0.0000 | 0 | B5 | SSU rRNA | G | 1212 | G | 1213 | U | 1214 | C | 1215 | * | G | 1448 | U | 1449 | U | 1450 | C | 1451 | cWW | cHW | cWW | ||
| 9 | IL_7LYF_001 | 7LYF | 0.3006 | 1 | Isolated cWH basepair with non-canonical cWW | A | Dengue virus SLA | A | 90 | G | 91 | U | 93 | C | 94 | * | G | 39 | U | 40 | C | 41 | U | 42 | cWW | ncHW | ncwW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAAG*CCCAGG | 1 |
| CUAG*CCCG | 1 |
| CUUG*CUUG | 1 |
| UGCC*GUGA | 1 |
| CUUC*GGUG | 1 |
| AAUG*CAUU | 1 |
| GA(5BU)C*GGCC | 1 |
| GGUC*GUUC | 1 |
| AGUUC*GUCU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AA*CCAG | 1 |
| UA*CC | 1 |
| UU*UU | 1 |
| GC*UG | 1 |
| UU*GU | 1 |
| AU*AU | 1 |
| A(5BU)*GC | 1 |
| GU*UU | 1 |
| GUU*UC | 1 |
Release history
| Release | 4.10 |
|---|---|
| Date | 2026-05-20 |
| Status | New id, > 2 parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (6)
- Tandem non-canonical cWW pairs (2)
- Isolated cWH basepair with non-canonical cWW (1)
- Basepair signature
- cWW-L-R-L-R-cWW
- Heat map statistics
- Min 0.13 | Avg 0.41 | Max 0.87
Coloring options: