IL_11EL_053

3D structure

PDB id

11EL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chimeric Escherichia coli 70S ribosome containing an evolved 16S rRNA from Vibrio cholerae (VC-ST)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUGC*GAGGAAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11EL_053 not in the Motif Atlas

Geometric match to IL_8B0X_052

Geometric discrepancy: 0.1162

The information below is about IL_8B0X_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_32376.2

Basepair signature

cWW-cSH-cWW-tWH-L-cWW-L-L

Number of instances in this motif group

3

Unit IDs

11EL|1|A|C|1159
11EL|1|A|U|1160
11EL|1|A|G|1161
11EL|1|A|C|1162
*
11EL|1|A|G|1176
11EL|1|A|A|1177
11EL|1|A|G|1178
11EL|1|A|G|1179
11EL|1|A|A|1180
11EL|1|A|A|1181
11EL|1|A|G|1182

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain B

Small ribosomal subunit protein uS2

Chain I

Small ribosomal subunit protein uS9