IL_11EL_077

3D structure

PDB id

11EL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chimeric Escherichia coli 70S ribosome containing an evolved 16S rRNA from Vibrio cholerae (VC-ST)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAAC*GAGUGAAAAAGAAC

Length

18 nucleotides

Bulged bases

11EL|1|a|A|504, 11EL|1|a|A|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11EL_077 not in the Motif Atlas

Geometric match to IL_8B0X_075

Geometric discrepancy: 0.0543

The information below is about IL_8B0X_075

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_44923.2

Basepair signature

cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L

Number of instances in this motif group

10

Unit IDs

11EL|1|a|G|481
11EL|1|a|A|482
11EL|1|a|A|483
11EL|1|a|C|484
*
11EL|1|a|G|496
11EL|1|a|A|497
11EL|1|a|G|498
11EL|1|a|U|499
11EL|1|a|G|500
11EL|1|a|A|501
11EL|1|a|A|502
11EL|1|a|A|503
11EL|1|a|A|504
11EL|1|a|A|505
11EL|1|a|G|506
11EL|1|a|A|507
11EL|1|a|A|508
11EL|1|a|C|509

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain r

Large ribosomal subunit protein uL22

Chain t

50S ribosomal protein L24