IL_11EL_109

3D structure

PDB id

11EL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chimeric Escherichia coli 70S ribosome containing an evolved 16S rRNA from Vibrio cholerae (VC-ST)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUGCGAAG*UGGAG

Length

13 nucleotides

Bulged bases

11EL|1|a|C|1211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11EL_109 not in the Motif Atlas

Homologous match to IL_7A0S_043

Geometric discrepancy: 0.1716

The information below is about IL_7A0S_043

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_90775.2

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

30

Unit IDs

11EL|1|a|C|1208
11EL|1|a|U|1209
11EL|1|a|G|1210
11EL|1|a|C|1211
11EL|1|a|G|1212
11EL|1|a|A|1213
11EL|1|a|A|1214
11EL|1|a|G|1215
*
11EL|1|a|U|1234
11EL|1|a|G|1235
11EL|1|a|G|1236
11EL|1|a|A|1237
11EL|1|a|G|1238

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain p

50S ribosomal protein L20