IL_11EL_135

3D structure

PDB id

11EL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chimeric Escherichia coli 70S ribosome containing an evolved 16S rRNA from Vibrio cholerae (VC-ST)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

11EL|1|a|A|1801, 11EL|1|a|C|1816, 11EL|1|a|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11EL_135 not in the Motif Atlas

Homologous match to IL_7A0S_065

Geometric discrepancy: 0.0888

The information below is about IL_7A0S_065

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.6

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

11EL|1|a|U|1798
11EL|1|a|G|1799
11EL|1|a|C|1800
11EL|1|a|A|1801
11EL|1|a|A|1802
11EL|1|a|A|1803
11EL|1|a|C|1804
*
11EL|1|a|G|1813
11EL|1|a|G|1814
11EL|1|a|A|1815
11EL|1|a|C|1816
11EL|1|a|G|1817
11EL|1|a|U|1818
11EL|1|a|A|1819
11EL|1|a|U|1820
11EL|1|a|A|1821

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain A

Small subunit ribosomal RNA; SSU rRNA

Chain c

50S ribosomal protein L2