IL_11EL_164

3D structure

PDB id

11EL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chimeric Escherichia coli 70S ribosome containing an evolved 16S rRNA from Vibrio cholerae (VC-ST)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11EL_164 not in the Motif Atlas

Homologous match to IL_7A0S_094

Geometric discrepancy: 0.0875

The information below is about IL_7A0S_094

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.6

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

6

Unit IDs

11EL|1|a|C|2652
11EL|1|a|U|2653
11EL|1|a|A|2654
11EL|1|a|G|2655
11EL|1|a|U|2656
11EL|1|a|A|2657
11EL|1|a|C|2658
*
11EL|1|a|G|2663
11EL|1|a|G|2664
11EL|1|a|A|2665
11EL|1|a|C|2666
11EL|1|a|C|2667
11EL|1|a|G|2668

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain g

Large ribosomal subunit protein uL6