IL_11FV_008

3D structure

PDB id

11FV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chimeric Escherichia coli 70S ribosome containing an evolved 16S rRNA from Pseudomonas aeruginosa (PA-S3.3)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAAU*AGC

Length

7 nucleotides

Bulged bases

11FV|1|C|A|124

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11FV_008 not in the Motif Atlas

Geometric match to IL_8B0X_009

Geometric discrepancy: 0.0896

The information below is about IL_8B0X_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_76400.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

11

Unit IDs

11FV|1|C|G|122
11FV|1|C|A|123
11FV|1|C|A|124
11FV|1|C|U|125
*
11FV|1|C|A|225
11FV|1|C|G|226
11FV|1|C|C|227

Current chains

Chain C

16S ribosomal RNA

Nearby chains

Chain 2

Small ribosomal subunit protein bS20

Chain x

Small ribosomal subunit protein bS16

Chain y

Small ribosomal subunit protein uS17