#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name for chain 1 2 3break 4 5 61-62-53-4
1 IL_7VFT_0017VFT0.28860Isolated non-canonical cWW contactARNA (23-mer)C5||||12_555A6||||12_555G7||||12_555*C17A18G19cWWcWW
2 IL_3NJ7_0033NJ70.12540Isolated non-canonical cWW pairD+CRNA (10-mer)C6A7G8*C3A4G5cWWcWW
3 IL_3NJ7_0043NJ70.12200Isolated non-canonical cWW pairC+DRNA (10-mer)C6A7G8*C3A4G5cWWcWW
4 IL_9SUM_1599SUM0.09510Isolated non-canonical cWW pair (H)CA SSU rRNAC400A401U402*A409A410G411cWWncwWcWW
5 IL_8CRE_4128CRE0.09460Isolated non-canonical cWW pairCM SSU rRNAC409A410U411*A418A419G420cWWcWW
6 IL_9H3G_1779H3G0.06150Isolated non-canonical cWW pairh1 SSU rRNAC413A414PSU415*A2M422A423G424cWWcWW
7 IL_9PN5_1639PN50.00000Isolated non-canonical cWW pairB5 SSU rRNAC411A412U413*A420A421G422cWWcWW
8 IL_8GLP_3258GLP0.11880Isolated non-canonical cWW pairS2 SSU rRNAC459A460U461*A2M468A469G470cWWcWW
9 IL_4V9F_0774V9F0.18100Isolated non-canonical cWW pair0 LSU rRNAG2136A2137C2138*G2237A2238C2239ncWWcWW
10 IL_9PN5_1779PN50.19300Isolated non-canonical cWW pairB5 SSU rRNAC646G647G648*C686G687G688cWWncSWcWW
11 IL_7VFT_0027VFT0.12450Isolated non-canonical cWW pairARNA (23-mer)C14A15G16*C8||||12_555A9||||12_555G10||||12_555cWWcWW
12 IL_5UNE_0045UNE0.24180Isolated non-canonical cWW pairB+ARNA (47-MER)C27A28G29*U16A17G18cWWcwWcWW
13 IL_8GLP_0308GLP0.33720Isolated non-canonical cWW pairL5 LSU rRNAG497C498G499*C655C656C657cWWcWW
14 IL_5C5W_0025C5W0.23580Isolated non-canonical cWW pairARNA (19-mer)U9||AC10||AA11||A*U9||A||5_556C10||A||5_556A11||A||5_556cWWcWW
15 IL_9H3G_1349H3G0.19720Isolated non-canonical cWW pairA LSU rRNAC3160C3161C3162*G3269A3270G3271cWWncWWcWW
16 IL_7ECN_0027ECN0.17960Isolated non-canonical cWW pairB+ARNA (12-mer)G3C4C5*G8A9C10cWWcWW
17 IL_7ECN_0017ECN0.22750Isolated non-canonical cWW pairA+BRNA (12-mer)G3C4C5*G8A9C10cWWcWW
18 IL_7ECK_0157ECK0.29270Isolated non-canonical cWW pairJ+IDNA/RNA (5'-R(*GP*GP*AP*CP*U)-D(P*(CBR))-R(P*GP*AP*AP*UP*CP*C)-3')A3C4U5*A8A9U10cWWncWWancWW
19 IL_7ECK_0137ECK0.25650Isolated non-canonical cWW pairI+JDNA/RNA (5'-R(*GP*GP*AP*CP*U)-D(P*(CBR))-R(P*GP*AP*AP*UP*CP*C)-3')A3C4U5*A8A9U10cWWncWWacWW
20 IL_1Z79_0021Z790.26470Isolated non-canonical cWW pairA+BRNA 5'-R(*GP*CP*AP*GP*AP*(A5M)P*UP*UP*AP*AP*AP*UP*CP*UP*GP*C)-3'A5A5M6U7*A10A11U12cWWcWWcWW
21 IL_1Z7F_0061Z7F0.24470Isolated non-canonical cWW pairC+BRNA (16-mer)A21C22U23*A10A11U12cWWcWWcWW
22 IL_8GLP_0038GLP0.27370Isolated non-canonical cWW pairL8+L5 5.8S rRNAG139C140C141*G16A17C18cWWcWWcWW
23 IL_1Y27_0011Y270.26830Isolated non-canonical cWW pairXPurine riboswitchU25C26G27*C43A44A45cWWcWWcWW
24 IL_9H3G_1889H3G0.32610Isolated non-canonical cWW pairh1 SSU rRNAC1106C1107G1108*C616A617G618cWWcWWcWW
25 IL_8GLP_2258GLP0.31450Isolated non-canonical cWW pairS2 SSU rRNAC1162C1163G1164*C663A664G665cWWcWWcWW
26 IL_4RUM_0014RUM0.37171Isolated non-canonical cWW pairANiCo riboswitchG13A14C16*G88A89C90cWWcwWcWW
27 IL_9DFE_0409DFE0.39201Isolated non-canonical cWW pair1A LSU rRNAG1031A1032G1034*C1121G1122C1123cWWcWWcWW
28 IL_8B0X_1028B0X0.40141Isolated non-canonical cWW pair (H)a LSU rRNAG1033A1034G1036*C1123G1124C1125cWWcWWcWW
29 IL_7A0S_0387A0S0.41461Isolated non-canonical cWW pairX LSU rRNAG1042A1043G1045*C1132G1133C1134cWWncWWcWW
30 IL_4WF9_0414WF90.41971Isolated non-canonical cWW pairX LSU rRNAG1075A1076G1078*C1165G1166C1167cWWncWWcWW
31 IL_4K31_0024K310.35021Isolated non-canonical cWW pairC+BRNA (23-mer)A16A17G19*C7G8U9cWWcWWcWW
32 IL_4K31_0034K310.35801Isolated non-canonical cWW pairB+CRNA (23-mer)A16A17G19*C7G8U9cWWcWWcWW
33 IL_6TFF_0036TFF0.36191Isolated non-canonical cWW pairAnadA RNAC34A35C37*G23G24G25cWWcWWcWW
34 IL_7D7W_0037D7W0.41021Isolated non-canonical cWW pairAnadA RNAG23G24G25*C34A35C37cWWcWWcWW
35 IL_7D7V_0037D7V0.36001Isolated non-canonical cWW pairAnadA RNAC41A42U44*G22G23G24cWWcWWcWW
36 IL_8B0X_0098B0X0.49461Isolated non-canonical cWW pair (H)A SSU rRNAG128A129A131*U231G232C233cWWcWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
CAG*CAG4
GAUG*CGC4
CAU*AAG3
GCC*GAC3
ACU*AAU3
CCG*CAG2
AAAG*CGU2
CA(PSU)*(A2M)AG1
CAU*(A2M)AG1
GAC*GAC1
CGG*CGG1
CAG*UAG1
GCG*CCC1
UCA*UCA1
CCC*GAG1
AU*AAU1
UCG*CAA1
GAGC*GAC1
CAGC*GGG1
GGG*CAGC1
CAGU*GGG1
GAAA*UGC1
Non-Watson-Crick part of the motif
SequenceCounts
A*A11
C*A10
AU*G4
AA*G3
C*C2
AG*G2
G*G1
(A5M)*A1
AG*A1
G*AG1

Release history

Release4.14
Date2026-09-09
StatusNew id, > 2 parents

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • Isolated non-canonical cWW pair (32)
  • Isolated non-canonical cWW pair (H) (3)
  • Isolated non-canonical cWW contact (1)
  • Basepair signature
    cWW-cWW-cWW
    Heat map statistics
    Min 0.01 | Avg 0.33 | Max 0.64
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