IL_11FV_013
3D structure
- PDB id
- 11FV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Chimeric Escherichia coli 70S ribosome containing an evolved 16S rRNA from Pseudomonas aeruginosa (PA-S3.3)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GAUUAG*CGACGAUC
- Length
- 14 nucleotides
- Bulged bases
- 11FV|1|C|U|238, 11FV|1|C|C|274
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_11FV_013 not in the Motif Atlas
- Homologous match to IL_6CZR_123
- Geometric discrepancy: 0.188
- The information below is about IL_6CZR_123
- Detailed Annotation
- Kink-turn with non-sequential stacking
- Broad Annotation
- Kink-turn
- Motif group
- IL_46174.2
- Basepair signature
- cWW-cSS-tSS-tSH-L-cWW-tHW-cWW
- Number of instances in this motif group
- 6
Unit IDs
11FV|1|C|G|236
11FV|1|C|A|237
11FV|1|C|U|238
11FV|1|C|U|239
11FV|1|C|A|240
11FV|1|C|G|241
*
11FV|1|C|C|271
11FV|1|C|G|272
11FV|1|C|A|273
11FV|1|C|C|274
11FV|1|C|G|275
11FV|1|C|A|276
11FV|1|C|U|277
11FV|1|C|C|278
Current chains
- Chain C
- 16S ribosomal RNA
Nearby chains
- Chain t
- 30S ribosomal protein S12
- Chain y
- Small ribosomal subunit protein uS17
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