IL_11FV_019

3D structure

PDB id

11FV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chimeric Escherichia coli 70S ribosome containing an evolved 16S rRNA from Pseudomonas aeruginosa (PA-S3.3)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11FV_019 not in the Motif Atlas

Geometric match to IL_8B0X_019

Geometric discrepancy: 0.2794

The information below is about IL_8B0X_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_62329.1

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

11FV|1|C|U|403
11FV|1|C|G|404
11FV|1|C|A|405
11FV|1|C|A|406
11FV|1|C|G|407
11FV|1|C|A|408
11FV|1|C|A|409
11FV|1|C|G|410
*
11FV|1|C|U|421
11FV|1|C|G|422
11FV|1|C|U|423
11FV|1|C|A|424
11FV|1|C|A|425
11FV|1|C|A|426
11FV|1|C|G|427

Current chains

Chain C

16S ribosomal RNA

Nearby chains

Chain F

Small ribosomal subunit protein uS4