IL_8B0X_019

3D structure

PDB id

8B0X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translating 70S ribosome in the unrotated state (P and E, tRNAs)

Experimental method

ELECTRON MICROSCOPY

Resolution

1.55 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8B0X_019 not in the Motif Atlas

Homologous match to IL_5J7L_020

Geometric discrepancy: 0.1026

The information below is about IL_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

8B0X|1|A|U|409
8B0X|1|A|G|410
8B0X|1|A|A|411
8B0X|1|A|A|412
8B0X|1|A|G|413
8B0X|1|A|A|414
8B0X|1|A|A|415
8B0X|1|A|G|416
*
8B0X|1|A|U|427
8B0X|1|A|G|428
8B0X|1|A|U|429
8B0X|1|A|A|430
8B0X|1|A|A|431
8B0X|1|A|A|432
8B0X|1|A|G|433

Current chains

Chain A

16S rRNA

Nearby chains

Chain D

30S ribosomal protein S4