IL_11FV_023

3D structure

PDB id

11FV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chimeric Escherichia coli 70S ribosome containing an evolved 16S rRNA from Pseudomonas aeruginosa (PA-S3.3)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUGCCAG*CGGUAAUAC

Length

16 nucleotides

Bulged bases

11FV|1|C|A|526, 11FV|1|C|U|528, 11FV|1|C|A|529

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11FV_023 not in the Motif Atlas

Homologous match to IL_6CZR_133

Geometric discrepancy: 0.2501

The information below is about IL_6CZR_133

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.3

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

11FV|1|C|G|509
11FV|1|C|U|510
11FV|1|C|G|511
11FV|1|C|C|512
11FV|1|C|C|513
11FV|1|C|A|514
11FV|1|C|G|515
*
11FV|1|C|C|522
11FV|1|C|G|523
11FV|1|C|G|524
11FV|1|C|U|525
11FV|1|C|A|526
11FV|1|C|A|527
11FV|1|C|U|528
11FV|1|C|A|529
11FV|1|C|C|530

Current chains

Chain C

16S ribosomal RNA

Nearby chains

Chain E

Small ribosomal subunit protein uS3

Chain F

Small ribosomal subunit protein uS4

Chain t

30S ribosomal protein S12