IL_11FV_039

3D structure

PDB id

11FV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chimeric Escherichia coli 70S ribosome containing an evolved 16S rRNA from Pseudomonas aeruginosa (PA-S3.3)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GCA*UUCCC

Length

8 nucleotides

Bulged bases

11FV|1|C|C|928

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11FV_039 not in the Motif Atlas

Homologous match to IL_6CZR_410

Geometric discrepancy: 0.2032

The information below is about IL_6CZR_410

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_47078.2

Basepair signature

cWW-cWS-L-cWW-L

Number of instances in this motif group

6

Unit IDs

11FV|1|C|G|927
11FV|1|C|C|928
11FV|1|C|A|929
*
11FV|1|C|U|1374
11FV|1|C|U|1375
11FV|1|C|C|1376
11FV|1|C|C|1377
11FV|1|C|C|1378

Current chains

Chain C

16S ribosomal RNA

Nearby chains

Chain n

Small ribosomal subunit protein uS7

Chain p

Small ribosomal subunit protein uS9