Motif IL_47078.2 Version IL_47078.2 of this group appears in releases 3.88 to 3.95
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 1-3 | 1-7 | 4-7 | 5-6 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_5J7L_043 | 5J7L | 0.5743 | 0 | Minor groove platform | AA | G | 993 | A | 994 | C | 995 | A | 996 | U | 997 | * | A | 1044 | C | 1045 | cWW | cWS | cWW | |
| 2 | IL_4LFB_039 | 4LFB | 0.5943 | 0 | Minor groove platform | A | G | 993 | A | 994 | C | 995 | A | 996 | U | 997 | * | A | 1044 | C | 1045 | cWW | cWS | cWW | |
| 3 | IL_6CZR_151 | 6CZR | 0.5095 | 0 | Minor groove platform | 1a | G | 971 | A | 972 | C | 973 | A | 974 | U | 975 | * | A | 1027 | C | 1028 | cWW | ncWS | cWW | |
| 4 | IL_5J7L_041 | 5J7L | 0.0000 | 1 | Minor groove platform | AA | U | 1380 | U | 1381 | C | 1382 | C | 1383 | C | 1384 | * | G | 933 | A | 935 | ncSH | cWW | cWS | cWW |
| 5 | IL_4LFB_037 | 4LFB | 0.0542 | 1 | Minor groove platform | A | U | 1380 | U | 1381 | C | 1382 | C | 1383 | C | 1384 | * | G | 933 | A | 935 | cWW | cWS | cWW | |
| 6 | IL_6CZR_410 | 6CZR | 0.2010 | 1 | 1a | U | 1363 | U | 1364 | C | 1365 | C | 1366 | C | 1367 | * | G | 911 | A | 913 | cWW | ncWS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GACAU*AC | 3 |
| UUCCC*GCA | 3 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| ACA* | 3 |
| UCC*C | 3 |
Release history
| Release | 3.88 | 3.89 | 3.90 | 3.91 | 3.92 | 3.93 | 3.94 | 3.95 |
|---|---|---|---|---|---|---|---|---|
| Date | 2024-09-11 | 2024-10-09 | 2024-11-06 | 2024-12-04 | 2025-01-01 | 2025-01-29 | 2025-02-26 | 2025-03-26 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Minor groove platform (5)
- (1)
- Basepair signature
- cWW-cWS-L-cWW-L
- Heat map statistics
- Min 0.05 | Avg 0.35 | Max 0.63
Coloring options: