RNA 3D Hub //

Motif IL_47078.2 Version IL_47078.2 of this group appears in releases 3.88 to 3.95

#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 4 5break 6 71-31-74-75-6
1 IL_5J7L_0435J7L0.57430Minor groove platformAA SSU rRNAG993A994C995A996U997*A1044C1045cWWcWScWW
2 IL_4LFB_0394LFB0.59430Minor groove platformA SSU rRNAG993A994C995A996U997*A1044C1045cWWcWScWW
3 IL_6CZR_1516CZR0.50950Minor groove platform1a SSU rRNAG971A972C973A974U975*A1027C1028cWWncWScWW
4 IL_5J7L_0415J7L0.00001Minor groove platformAA SSU rRNAU1380U1381C1382C1383C1384*G933A935ncSHcWWcWScWW
5 IL_4LFB_0374LFB0.05421Minor groove platformA SSU rRNAU1380U1381C1382C1383C1384*G933A935cWWcWScWW
6 IL_6CZR_4106CZR0.201011a SSU rRNAU1363U1364C1365C1366C1367*G911A913cWWncWScWW

3D structures

Complete motif including flanking bases
SequenceCounts
GACAU*AC3
UUCCC*GCA3
Non-Watson-Crick part of the motif
SequenceCounts
ACA*3
UCC*C3

Release history

Release3.883.893.903.913.923.933.943.95
Date2024-09-112024-10-092024-11-062024-12-042025-01-012025-01-292025-02-262025-03-26
StatusUpdated, 1 parentExact matchExact matchExact matchExact matchExact matchExact matchExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • Minor groove platform (5)
  • (1)
    • Basepair signature
    cWW-cWS-L-cWW-L
    Heat map statistics
    Min 0.05 | Avg 0.35 | Max 0.63
    Help

    Coloring options:

    IL_5J7L_043:IL_5J7L_043 = 0IL_5J7L_043:IL_4LFB_039 = 0.1413IL_5J7L_043:IL_6CZR_151 = 0.2828IL_5J7L_043:IL_5J7L_041 = 0.5743IL_5J7L_043:IL_4LFB_037 = 0.5897IL_5J7L_043:IL_6CZR_410 = 0.6207IL_4LFB_039:IL_5J7L_043 = 0.1413IL_4LFB_039:IL_4LFB_039 = 0IL_4LFB_039:IL_6CZR_151 = 0.2676IL_4LFB_039:IL_5J7L_041 = 0.5943IL_4LFB_039:IL_4LFB_037 = 0.6126IL_4LFB_039:IL_6CZR_410 = 0.6334IL_6CZR_151:IL_5J7L_043 = 0.2828IL_6CZR_151:IL_4LFB_039 = 0.2676IL_6CZR_151:IL_6CZR_151 = 0IL_6CZR_151:IL_5J7L_041 = 0.5095IL_6CZR_151:IL_4LFB_037 = 0.5258IL_6CZR_151:IL_6CZR_410 = 0.5478IL_5J7L_041:IL_5J7L_043 = 0.5743IL_5J7L_041:IL_4LFB_039 = 0.5943IL_5J7L_041:IL_6CZR_151 = 0.5095IL_5J7L_041:IL_5J7L_041 = 0IL_5J7L_041:IL_4LFB_037 = 0.0542IL_5J7L_041:IL_6CZR_410 = 0.201IL_4LFB_037:IL_5J7L_043 = 0.5897IL_4LFB_037:IL_4LFB_039 = 0.6126IL_4LFB_037:IL_6CZR_151 = 0.5258IL_4LFB_037:IL_5J7L_041 = 0.0542IL_4LFB_037:IL_4LFB_037 = 0IL_4LFB_037:IL_6CZR_410 = 0.1872IL_6CZR_410:IL_5J7L_043 = 0.6207IL_6CZR_410:IL_4LFB_039 = 0.6334IL_6CZR_410:IL_6CZR_151 = 0.5478IL_6CZR_410:IL_5J7L_041 = 0.201IL_6CZR_410:IL_4LFB_037 = 0.1872IL_6CZR_410:IL_6CZR_410 = 0IL_5J7L_043IL_4LFB_039IL_6CZR_151IL_5J7L_041IL_4LFB_037IL_6CZR_410Discrepancy0.000.100.200.300.400.500.60
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