IL_11FV_057

3D structure

PDB id

11FV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chimeric Escherichia coli 70S ribosome containing an evolved 16S rRNA from Pseudomonas aeruginosa (PA-S3.3)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11FV_057 not in the Motif Atlas

Geometric match to IL_8CRE_468

Geometric discrepancy: 0.1137

The information below is about IL_8CRE_468

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.5

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

238

Unit IDs

11FV|1|C|G|1399
11FV|1|C|U|1400
11FV|1|C|C|1401
*
11FV|1|C|G|1488
11FV|1|C|U|1489
11FV|1|C|C|1490

Current chains

Chain C

16S ribosomal RNA

Nearby chains

Chain I

Large subunit ribosomal RNA; LSU rRNA